prpf3 (prpf3)


Basic Information

Item Value
gene id prpf3
gene name prpf3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2110877 ~ 2121710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256835.3
GCTGCGTCTCCGTTTCCGACTGACACAACGTTTTGTGTGCGAAGCGGCTGTAGGAAAGTTGGAGAAACATTTCTACTGTTTTAGAGCTGTCCTGCGCTAAACGCGGGCTGTAGTTCACGGAGCGTTTAATATTACACCGCTGCACTTAGGGCGGAATCGATAACTGAGAGGAATTAGCTGAGAGCTCTTCCCAGCATGTCGCTGCCCAAGCGGGAGGTTGAGGAGCTGCGGCCCTGGGTGGAGCGGACAGTGAAAAAGGTTCTTGGCTTCTCAGAACCGACTGTGGTCACTGCAGCTCTGCACTGTGTAGGAAAGGGCCTAGACAAAAGAAAGACAACAGACCAGCTAAGGCCGTTTCTTGATGATTCTGCGAGCGGCTTTGTGGAGCGGCTCTTTGAGGCACTGGAGGAGAGTAGAAACTCTCGGGGCAGCAGAGGTTCAGGAGACAAGAATCGCaagagggagctgaaggaTGTATTTGGTGATGAAGTGGAAGGGTCAAAGGATGGAGAGAGTGGGGAAGTTGCTTCAAAGAGAAAGAGGGTGCCTCGTTTTGAGGAGGTTGAGGAGCCAGAAGTTATCTCTGGGCCTCCATCAGAAAGTCCTGCCATGCTCACAAAGATGCAGATAAAGCAGATGATGGAAGCAGCCACACGGCAGATCGAGGAGAGGAAAAAGCAGCTCAGTTTTGTGGCTCCAGTTCCTGCCAGTCAGTCTAGAATGTCTCAGGCCCCATCTCAGCCAGAGGCCCCAACCACACGCCCTGTGCTCCCCTCACTGGGTTCCTCTGCAGGGGGAGGAAATCAGTCCATCGCCCCCTCCCAAGCTGCTAGCTTCATGAATGATGCTATCGAAAAGGCTCGCAAAGCAGCTGAGCTCCAGGCTAAAATTCAGTCCACTCTGGCTATGAAGCCTGGCATCTTGGGGGCTATTAACAACCAAGGACCACACAATCTTGTAGCACTGGCCAACCTGCATGCTATGGGGATTGCACCACCcaAAGTGGAGGCTCGTGAGATTACAAAGCCAACACCCCTCATTCTGGATGAACTTGGAAGAACTGTTGATGCCAGTGGCAAGGAAGTAGAACTGACGCATCGCATGCCCACTTTGAAAGCTAATATTAGGGCAGTGAAGAGAGAGCAGTTCAGGCAGCAGCTGAAGGAGAAGCCAAGTGATGATCTTGAGTCTACATCCTACTTTGACCCAAGGATGATTGTGCCACCACCACAGAGAGCCAGAAGGGGGTTCAAGTTCCACGAACAAGGACGCTTTGAGAAAATAGCCCAGCGGATACGTACCAAGACTCAACTGGAAAGGCTTCAAATGGAGATTGCACAGGCTGCTAAGAAGACTGGAATCCAGGCCTCAACCAAGCTGGCTCTGATCGCCCCTAAGAAGGAGCTCGGAGAGGGAGAGGTGCCTTTCATCGAGTGGTGGGACTCCTATATTCTACCCTCCAACGTAGAGCTttCCTCTGAGATGGTACTTGATGGCGTGGAGTTTCATGGGGTCACAAATTTGGTGGAACATCCGGCCCAAATGGCCCCTCCTGTGGATTCAGACAAGCCAGTCACACTAGGTGTATATTTGACAAAGAAGGAACAGAAGAAACTCAGGCGGCAGACAAGACGGGAGGGTCAGAAAGAGGTCCAGGAGAAGGTCCGCCTTGGTCTCATGCCCCCACCAGAACCCAAAGTGCGTATCTCTAATTTGATGCGAGTACTGGGGACGGAGGCGGTGCAAGATCCTACGAAAGTGGAAGCCCACGTTCGAGCACAGATGGCCAAGAGACAGAAGGCTCACGAGGAAGCGAATGCAGCACGTAAACTTACAGCAGAACAGAGGAAAGAGAAGAAGGTGAAGAAGCTAAAGGAAGATCTAAGTCAAGGAGTTCACATTGCTGTCTACAGGATCCGAAATCTGCACAATCCAGCCAAAAAGTTCAAGGTGGAGGCCAACGCTAACCAGCTCTACCTCACAGGCACGGTGGTGCTGCATAAAGACGTCAACATTGTGGTGGTGGAGGGAGGACCCAAGTCCCAGAAGAAGTTTAAGAGGCTGATGCTGAACAGGATCAAATGGGAAGAACACAACTCAAAGAGAGATGACCCTGATGGTTCAGATGAAGAGGGATCAAAGAAAACCAACAAGTGCACACTGGTTTGGGAGGGCACAGCTAAGGAACGCAGTTTTGGGGATGTGAAGTTCAAGCAGTGTCCCACAGAGAACATGGCACGAGAGCATTTTAAGAAGCATGCAACAGAACACTATTGGGACATGGCCCTAAGCCAAAGCATTCTGGAGAGTGCTGATGATTGAGACCAACGTGACGAATCAAAAGAGACCTGATACTTGCAGCATAACCTGTGTGCTGCACATACACTGTGTTACGGACAatagagagaacaagagagactgttttgtgtgtatgtatgtaaaatatagaCCGTTGAAGAAGCAGTAAGAAGTGGATCATGAGTATGTGTGGTTAAAGATTGCTTGTTCTGTCAGACGGATACGGATTTATCAGAACCTGTTGAACTTCAGTGACCGGATTTGATTGAGCCTCTTCTTCAGATATGTATAATGTATCTTCAACAGTGAGAGACAGTAGCATCCAAATGGTTCCCCTGTGCATCAGTACTGCTTgctgagggtttttttttttttttttttttttttttttttttgctttgcagTGCCTGAAGCTAAAATCAGCTGCATTATTGCTGCTCTTTTGGAATACTGGCTTCTGGTCACGTGGACTTGAAGGCAATATGAAAAATATGGCTTCAGTGCACATGAGTTTGCTTAAAACATGCACATATTGTTGCTGGACTGTCTGGGACAAAGAACCACATATTTTTCATGTTCAATGTAAAAGGCTCTTTCATTGTTGAATGACACAGCTGGATATAATGTTGAGGTAATTTTATTTCcccatatttttctttttttcttttttcccctctcccAGTTAGAATTTATTTGAATGTACCTAAACTGTTGTCAACTACAGTAAAGTTTTGGGGAAACGCCTGTTGGAATA

Function

symbol description
prpf3 Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 18. Orthologous to human PRPF3 (pre-mRNA processing factor 3).

NR:

description
PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12843 PRPF3, PRP3; U4/U6 small nuclear ribonucleoprotein PRP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256835.3 True 3052 mRNA 0.48 17 2110877 2121710

Neighbor

gene id symbol gene type direction distance location
LOC103032920 NA coding upstream 25479 2074608 ~ 2085398 (+)
nov NA coding upstream 155811 1950534 ~ 1955066 (+)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 186726 1911105 ~ 1924151 (+)
colec10 NA coding upstream 204969 1887601 ~ 1905908 (+)
c11h7orf50 cunh7orf50 coding upstream 595140 1498111 ~ 1515737 (+)
ice1 NA coding downstream 4573 2126283 ~ 2148738 (+)
LOC103036307 LOC106588695 coding downstream 30207 2151917 ~ 2167691 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding downstream 120460 2242170 ~ 2495068 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding downstream 614419 2736129 ~ 3006374 (+)
cobl NA coding downstream 1025659 3147369 ~ 3272603 (+)
G96541 NA non-coding upstream 34923 2075386 ~ 2075954 (+)
G96520 taf2 non-coding upstream 96590 2011391 ~ 2014287 (+)
G96517 taf2,LOC106594256 non-coding upstream 107266 1997871 ~ 2003611 (+)
G96460 NA non-coding upstream 252982 1810389 ~ 1857895 (+)
G96291 NA non-coding upstream 681660 1426258 ~ 1429217 (+)
LOC111193411 NA non-coding downstream 102872 2224582 ~ 2227412 (+)
G96582 NA non-coding downstream 140329 2262039 ~ 2265095 (+)
G96601 NA non-coding downstream 332042 2453752 ~ 2454050 (+)
G96604 NA non-coding downstream 373659 2495369 ~ 2495929 (+)
G96609 NA non-coding downstream 379447 2501157 ~ 2503293 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1302303 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1267341 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1743280 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 2843760 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3685858 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4158612 6280322 ~ 6382717 (+)

Expression


Co-expression Network