nlrc3 (nlrc3)


Basic Information

Item Value
gene id nlrc3
gene name nlrc3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1020134 ~ 1209397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674033.1
ATGAACCGCAGCTTGGGCGTGGCTGGCAGCGGGAAGAGCCGACTGGTCCGCCAGTTTGTCCATCAGTGGAGCTCCGGAAAGATATACCCAGATTTGAGCTTGGTGATTCCTgttgcatgctgggaattgagCAATTTGGATCGGCTGTCAGTTGAGAGAATGCTTCGGTTGGTCGTGCCGTACGATAACGTGGATGTGATTTTGAACAGCAGTGACTGTAAAGTGCTGCTGATCTTTGATGGGTTGGAAGAGTTCCGTACCCCTCTGGACTTCTCGGAGGCTCCGGCAAATTCTGACCCTCGCAGAGAGCTTCCAGTGTCAGACCTCATCACCAACATAGTCAGAGGCAATCTGTTACCAGGAGTCATGCTCTGGCTTCTGTCAAGACCTGGCGTGGGATCAAAAGTACCTGCAGGACTGGTGGATCGTGTGACAGAAGTCCCCCCTTTTTCACCCACAGACATCCAGGATTACCTCACGAACCCCCCAAGACACTTGCAGGAAAACTCTCACACACCTTCTCAGGAATCCACGCCACGTTCTCGTGATGCAAGGGAGGAGGACCCTTCGCACAAGGTGTGGGATCACCTGAGTTTGCAGAAGCCTTTGCGTATCCTGTGCTCTGTGCCTGGCATCTGTCGCATTGTCACAAGGACACTGTCCCGCCTTGTAGGCTCAGAGTCCGAGGATTTGCTTCTTCCACGAACCTTGACGGAGATATACACTCACTATTGTTGGCCACACCTTTCCTCTTCAGACCCTTCCACTGGAAGCATCCGGAAATCACTAACTTCCCTGGGACGCCTGGCCTTCTACAGCCTCCTACGACGGCGTCACACATTCTGCGAAGCTGAGTTACGGACTTACGGTGTCGATGTGCCGCCACCACGAGGAACTTTGGGACACAGAGTCCTCAAGCGTGAGCAGAGTTGGTCATCAGAAAGCATCTCATGGCGCTTCTTGCATACGTCTGTGCAGGAGTTTCTTGGTGCGGTTTTCTACTACATGTCCTCTCGGCGGGGGATGTTTGATTTGTTCTCTGAAAGCGGAGTCTCTTGGCCGCGCATCGGCTTCCACAGCCATTACCGTGCCGCCCTTCAGAAAAGCAGCACTGCCACCAGTGGTAACCTGGACCTTTTCATGTGCTTCCTATCTGGAGTGTTGTCCTCGGCAACAGGAGCCCTACTGGGCAGTGCTTTGGGCGTAGGCCGGGAGGAGCAAGTGAACCAGCGCACCATGGCCATGACCCTGCTTCAGAACACGGTGGCAGGGTCAGGGAGCGAGCCGGTTAGTATGCGCAGTGTTTCCACAGTGGCCTGTCTGGCAGAGCTTCAGCAGGGGGAGTGGCTTCGGTCTGTGGAGGAGGACCTGATTGGCTGTAGGTTGCGGGGAAAGTTGAAGGGAGGGGTTTGTGCAGTGCTGGCGTACCTGCTGCAGGTGTCGGACGCCTGTGCCGAAGAGACGCACCTCTCAAACTGCTTAGACTCTGCCTCCCTCAAGAGACTTCTTCCACAGCTTCTGTACTGCAGCAAGTTACGCATGGAAAACAACGGATTTAAGGATGATGCAATGGAGCTTCTGGGGAGCTTGCTGAGTGCCAAAGACTGTCACATTCAGTTCTTAAGTTTGGCAGACAGCTCCATTAGCAGTAAAGGGATCAAACCACTGAGTCGAGCCCTTCTGGTCAATCGAACACTCACTATACTGGATCTTCATGGCAACAACATCGGCACCAAAGGAGCAAAGACACTGGCCGAGGCTCTGAGAATGAACCAGATCATTGTGTCGATTAAtCTTCAGAGTAACAGTATTGAGGATGAGGGAGCTCGAGCTCTGGCAGAGGTGCTGCAGTCCAACCGGAAACTCACCTCACTGAATGTTCAAAAGAACGGTATCGGCCCAGACGGAGTGAAGAGAATTGCAGAGTCCCTAAAAAAGAACCAGATTCTACAAGACCTCAATGTATCAAGCAATCACTTGGGAGACCTTGGCACAGTGGCTTTGGCACAAGCTCTTGTGGTCAACCATACACTCTGCACtctcagTCTCCAGAGTAACTCCGTCAGTGACAAGGGCATGAAGGCTCTCACTCTGGCCCTGCGCTCCAACAGAGGCCTGACCACACTGAActTAAGGGAGAACTCTATAGGAGTTGAAGGTGCCAAGGCCATCGCTCGAGCTTTACAGGAGAACAGCACACTCAGAGAACTGGATCTCACTGCTAATCTTCTCCATGACGAAGGAGTGACGGCCATCGCTGGGTCAGTAAAAGTCAACCGAGCCCTCAGATCCTTACAtctcCAGTGGAACTTTATGAAGATTGGTGCTGCTAAAGCTCTGGCTCAGTCTCTCCACAGCAACTCAAGTATCCAGCTCCTGGAtttgcAGGAAAATACTCTGGGTGATGAAGGCGTTGTTGCTTTGGCTGGTGCTCTAAAGGCAAACTCGTCTCTTGCAGTGCTCTATCTTCAGGGTGTATCAGCCGGTAAGGCCGGGGCTGAGGCTTTGGCTGAAGCACTAATGGTCAACCAGACTCTCTGCACACTGGATCTGCGTGGCAACTCCATTGGAATGGGCGGGGCCAAAGCTCTCTCCAGTGCTCTGAAAACCAACAGGAGCTTGAGAAGTTTAAATCTTCAGGAGAACTCTTTAGGGATGGATGGAGCTATCTTCATCGCCACAGCGCTACGAGGAAACCACCAACTCACCTACATTAATCTCCAGGGTAACGGAATTGGCGAGTCCGGGGCAAAGGTCGTCTCAGATGCTATAAGAACAGACGCAGCGGAGTGTGTGGTGGACATCTAACACAcccaattatatatatttcacataatttattcatttcaaaaATCCATGTCAGTTAAGCTCAtcttattgtgtgtgtatatattatatactgtatttttattaaaagattaacatatca

Function

symbol description
nlrc3 Predicted to be involved in intracellular signal transduction. Is expressed in neuromast. Orthologous to human NLRC3 (NLR family CARD domain containing 3).

NR:

description
NLR family CARD domain-containing protein 3 isoform X2

GO: NA

KEGG:

id description
K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674033.1 True 2929 mRNA 0.51 17 1020134 1209397

Neighbor

gene id symbol gene type direction distance location
LOC111193408 NA coding upstream 71549 943873 ~ 948585 (+)
cog7 cog7,LOC107717425,LOC107747870 coding upstream 155546 840868 ~ 864588 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding upstream 224591 777829 ~ 795543 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding upstream 243646 753085 ~ 776488 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding upstream 269769 744385 ~ 750365 (+)
wdr90 wdr90,LOC107677127 coding downstream 14779 1224176 ~ 1271502 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding downstream 68387 1277784 ~ 1302779 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding downstream 112717 1322114 ~ 1415632 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding downstream 230432 1439829 ~ 1455488 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding downstream 273289 1482686 ~ 1486444 (+)
G96132 NA non-coding upstream 184032 835482 ~ 836102 (+)
G96124 NA non-coding upstream 210604 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 276395 736741 ~ 743739 (+)
G96073 NA non-coding upstream 434022 585905 ~ 586112 (+)
G96061 NA non-coding upstream 441303 578494 ~ 578831 (+)
G96281 NA non-coding downstream 132164 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 134640 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 155387 1364784 ~ 1456887 (+)
G96273 NA non-coding downstream 173028 1382425 ~ 1421881 (+)
G96289 NA non-coding downstream 182611 1392008 ~ 1392358 (+)
LOC103040575 ube2i,LOC107677193 other upstream 211560 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2179654 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2655593 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3756073 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4598171 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 5070925 6280322 ~ 6382717 (+)

Expression


Co-expression Network