LOC103046789 (LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743)


Basic Information

Item Value
gene id LOC103046789
gene name LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7026293 ~ 7036746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674043.1
TCCGTCTAGACTGACACAGGGTTACTGGACTGGGCAAACACATTCGGTGGGAAAGATCAGCCAAGAGcaaacaacATCAAAGATGAAGACACTCCTGCTCCTCGCTGTTGTGGCACTTACAGGCTCCCAAGCCAACCTCTTCTACGCTGATGAGCCCAAACCCCAGCTGGAGCAGCTGACTGATGCATTCTGGGACTATGTTGCCCAGGCCACACGCACTGCTGAGGACACAGTGAAGATGATCAGAGAGTCTCAGCTGGGACAGGAAGTCAATGCCAGAATCACAGACAGCGCCAGCGTGGCCAGCGAGTACGCCGTCAACCTCCAGAACAGAATGAGCCCCATTGCTCAGGACATCATGACCAAAATCACCAAGGAGGCTGAAGTTCTGAAGGAGCGTCTGGAGACCGACCTCACCGCCATGAAGGACAAGCTGGAGCCCTACGCCGACGATCTCAAGGCCCAGATCCAGCAGAGAGTGGAGGAGCTCCGAGTGGCTGTAGCTCCGTACGCTGAGTCCCTGGACTCCGAATCCCTGAAGGCCACCATTCTTCAGAAGACCGAGGAGCTCAGAGGAACCCTGgaggagagagtgaaggagCTGCAGTCTCAGCTGGAGCCCTACACCGCAGAACTCAAGCAGAAGGTTGACGAGCGCCTGCAGGAGTTCCAGAAGATCGTGGCGCCTCTAGGTGAGGATCTTCAGACCAGCGTTCTCCAGAGAACCAAGATGGTCCAGCAGAGTCTGGCTCCCTACGCTGAGGACCTGAGGGAGAGGCTGGACCCCTTTGCCCAGAACCTGAAGGACCAGCTCACCTCTCTTTATGAATCCTACACCAAAACCAGCAATCTGTCAGCAACCATGAAGGTGCTCGCGATACTGGTGCTCGCTGTTTTCACAGGCTCCCAAGCCAACCTCTTCTACGCTGATGAGCCCAAACCCCAGCTGGAGCAGCTGACTGATGCATTCTGGGACTATGTTGCCCAGGCCACACGCACTGCTGAGGACACAGTGAAGATGATCAGAGAGTCTCAGCTGGGACAGGAAGTCAATGCCAGAATCACAGACAGCGCCAGCGTGGCCAGCGAGTACGCCGTCAACCTCCAGAACAGAATGAGCCCCATTGCTCAGGACATCATGACCAAAATCACCAAGGAGGCTGAAGTTCTGAAGGAGCGTCTGGAGACCGACATGACCACCGTCAGGGACAAGCTGGAGCCCTACGCCGACGACCTCAAGGCCCAGATCCAGCAGAGAGTGGAGGAGCTCCGAGTGGCCGTCGCCCCCTACGCTGGAAACCTGGATTCTGAAGCCCTGAAGGCCACCGTTCTTCAGAAGACCGAGGAGCTCAGAGGAACCCTGgaggagagagtgaaggagCTGCAGTCTCAGCTGGGGCCCTACACCGACGAGCTGAGGCAGAAAGTCGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACCCCCCTGGCCGAGGATCTTCAGACCCAGGTCGCCCAGAGAGCCGAGATGGTCCAGCAGAGTCTGGCTCCCTACGCTGAGGACCTGAGGGAGAAACTGGACCCCTACGCCCAGAACCTGAAGGACCAGCTCGCCACTCTGTACGAGTCCTTCAGCAAgaccagctaaaaaaaaaaaacactgacaaaaaccTGAAATTTCCAATTTTCCCACTCCAATACTCCAATGACTGAtagctgctttgctttgctgcctccTCTGCATGTATTGTAGAATATGCCATCATTTCCACTGTAACTGTCATTTCCAGACTAGGCCATGTTGTGCAATGAACACAATTAAAGGTGTGTTGTAACATATGATACGATGTTTTTCcattctttaatttaataaagctcaaagaaatat

Function

NR:

description
PREDICTED: apolipoprotein A-I-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08760 APOA4; apolipoprotein A-IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674043.1 True 1870 mRNA 0.54 7 7026293 7036746

Neighbor

gene id symbol gene type direction distance location
gtpbp10 gtpbp10 coding upstream 74367 6935539 ~ 6951926 (+)
nbn NA coding upstream 120452 6885569 ~ 6905841 (+)
fam189b fam189b coding upstream 146922 6861598 ~ 6879371 (+)
rab13 rab13,LOC107723501,LOC107714709 coding upstream 165469 6852783 ~ 6860824 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding upstream 203251 6712421 ~ 6823042 (+)
LOC103043120 LOC108429949 coding downstream 12455 7049201 ~ 7051416 (+)
LOC103042602 NA coding downstream 39869 7076615 ~ 7081155 (+)
apoc2 NA coding downstream 48041 7084787 ~ 7089418 (+)
LOC111193393 NA coding downstream 249794 7286540 ~ 7288607 (+)
LOC103045564 LOC107570829 coding downstream 699576 7736322 ~ 7759796 (+)
G97901 NA non-coding upstream 141718 6883243 ~ 6884575 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding upstream 175530 6774278 ~ 6850763 (+)
G97870 NA non-coding upstream 198714 6824918 ~ 6827579 (+)
G97896 NA non-coding upstream 213933 6811521 ~ 6812360 (+)
G97883 NA non-coding upstream 269221 6756716 ~ 6757072 (+)
G97930 NA non-coding downstream 80864 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 83077 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 182486 7219232 ~ 7219527 (+)
G97940 NA non-coding downstream 202785 7239531 ~ 7239765 (+)
G97942 rps19,LOC107657656,LOC100689943 non-coding downstream 223245 7259991 ~ 7280844 (+)
adar adar,LOC107723500 other upstream 344602 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 461290 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 643576 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 1175763 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 2045346 4965470 ~ 4980947 (+)
apoc1 NA other downstream 25386 7062132 ~ 7066029 (+)
G97926 NA other downstream 31942 7068688 ~ 7070129 (+)
G97931 NA other downstream 91058 7127804 ~ 7130809 (+)
G98636 NA other downstream 2275660 9312406 ~ 9312803 (+)
G98840 NA other downstream 2959458 9996204 ~ 10002046 (+)

Expression


Co-expression Network