LOC111193393


Basic Information

Item Value
gene id LOC111193393
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7286540 ~ 7288607 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674044.1
ATGCCGGTGTGGCTGTTCTCCATGATTCAGTGTGTGCTCTCGGTGTGTGTGATCGGGGTGAGCGTCAGGCTGTGCATGGGTAATTCTGGTCTGGAGACGTCCGGCCTGGGTAAAACCGTGTCCGGCTGCCTGAAGCTGTGCCTGGCCTGGGTGGGAGCTGTGGGGGGTGCGGTGGGGGTCCCGATCAACATGCTGCTGAACCTGAGGAGCCCACAGTGCCTTTACACGTGCATCACGCTCATCTGCTGCCCCATGCTGATCAGACAGTTCACTAtatggctgctgctgctgctcacaaTCAATGCCCACCTGCAGGGCCGACTGGGACACAGGTACACCAGCTTGGTAACTCGTCAGAGGATGCTGTACCTGGTGCTCCTCACCTGGGTCTGCTCTGTGGTCACCGCCTTCGCGCAGTTCATCGTCTGCAGCTCTCTGGACACCTGGCAGGAGGTGACGTCTGAGTTGggtttggatggtccattaagGCCTAATCACACCTCCCACAAACCACCCAAACTCCCGCCTTCTCAAGACCGCTCTGTGATCGGGAAGCACCTTCCGTACGGGGGCTTCCTCTCTAAATTCCTGGTGGAGGACCTGCACAACTTTACCTACGAGGAGATCCACAGCAGCCACTGGGCAGTCTGTGCGCCGGACACTGTCCTCAGCCCGGTGTTCCTGGTCTACGTCTACGCAGTCGCCGTCTTTCTCGTCCCCGTCTTCGTCCTGATGGCTGTCTATATAGACCTGATGTGCCTGATGCCTCAGAAAGTAGCCGCAGGGTCTACTGGAGTCCAGAAGAAAAAACGAGTCCAGTCCCGTTCTCTGGTTCTGTCTATGTGTCTCCTGGTTCTCCTGTGTCTCCCCCTGCATGTCATCCACGCCCTGCGTCTCTTCTCTCCACAAGGACTCAGACCCATCTGGATAAAGTCTGTGGCCTCTGTTCTGTTCCAGGCCTACAGCTTAGTCCCTCCACTCCTGTTCACAGGACCTCTGGACCCGGTAGCTGGTGTAGTTTCCTCTCTGGAGTCGACTGTACCTCCAACCAGCTCTCGAGTGAAGCCCCTGAGCCCAGTTCCACTGGAGTTCTGTCCACCTGAGACAACACCAAAAGGCACTGTTCCTGTAGGGATGTAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674044.1 True 1140 mRNA 0.57 2 7286540 7288607

Neighbor

gene id symbol gene type direction distance location
apoc2 NA coding upstream 197122 7084787 ~ 7089418 (+)
LOC103042602 NA coding upstream 205385 7076615 ~ 7081155 (+)
LOC103043120 LOC108429949 coding upstream 235124 7049201 ~ 7051416 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding upstream 249794 7026293 ~ 7036746 (+)
gtpbp10 gtpbp10 coding upstream 334614 6935539 ~ 6951926 (+)
LOC103045564 LOC107570829 coding downstream 447715 7736322 ~ 7759796 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding downstream 559492 7848099 ~ 7866595 (+)
LOC111193438 NA coding downstream 580426 7869033 ~ 7881591 (+)
smg9 smg9,LOC107699520,LOC107595308 coding downstream 603168 7891775 ~ 7900812 (+)
spaca6 NA coding downstream 772356 8060963 ~ 8074397 (+)
G97942 rps19,LOC107657656,LOC100689943 non-coding upstream 5696 7259991 ~ 7280844 (+)
G97940 NA non-coding upstream 46775 7239531 ~ 7239765 (+)
G97938 NA non-coding upstream 67013 7219232 ~ 7219527 (+)
G97930 NA non-coding upstream 160904 7117610 ~ 7125636 (+)
G97929 NA non-coding upstream 161301 7119823 ~ 7125239 (+)
G97947 NA non-coding downstream 4398 7293005 ~ 7293267 (+)
G97948 NA non-coding downstream 6850 7295457 ~ 7298275 (+)
G97955 NA non-coding downstream 127672 7416279 ~ 7419621 (+)
G97965 NA non-coding downstream 203219 7491826 ~ 7492402 (+)
G97969 NA non-coding downstream 396006 7684613 ~ 7704822 (+)
G97931 NA other upstream 155731 7127804 ~ 7130809 (+)
G97926 NA other upstream 216411 7068688 ~ 7070129 (+)
apoc1 NA other upstream 220511 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 604849 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 721537 6532516 ~ 6565003 (+)
G98636 NA other downstream 2023799 9312406 ~ 9312803 (+)
G98840 NA other downstream 2707597 9996204 ~ 10002046 (+)
G98845 NA other downstream 2771826 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2883946 10172553 ~ 10178459 (+)
G98967 NA other downstream 3205184 10493791 ~ 10498518 (+)

Expression


Co-expression Network