LOC103045564 (LOC107570829)


Basic Information

Item Value
gene id LOC103045564
gene name LOC107570829
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7736322 ~ 7759796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674045.1
GTTTTGTTACGCTTGCTGTATGTGTACAAACTCTCCGCGTGAGGCTCAGATAGAAGCGGAGAGCTGCGGGAAGGAGCGGCGGTTCTTCTCAGAACAGGagaaaaactgaagaaaaacagaaaataattcTTTTTCCTCGGTGTGGTGTGCTGAAAACAGTAGACAGCAAAAGGAGATCTGACATGCACTTGCAGAAATCGCCAAAGGAGAAGTCGTGTTACACTCTGCCCACAGTGAAGAAACTCCTGGagcagaagagaaagagagagacttcaTCTGTACCTCCGGCCTGCGCTTCTGCTGCTGCATCCAGTACCGCTGGAGCCGTCGCGTCCGTACCAGTGAGTACCCTCATGCAgcgttccatcagcttccagagccctgagagagcacaatttgccttaCTCTTACATCTCTggttggCGCCAAAGGAGAAGTCGTGTTACACTCTGCCCACAGTGAAGAAACTCCTGGagcagaagagaaagagagagacttcaTCTGTACCTCCGGCCTGCGCTTCTGCTGCTGCATCCAGTACCGCTGGAGCCGTCGCGTCCGTACCAgTGTCAACATCAGCTCCTTCTGCCAgctcCAGCAGTAGCTATTTAGACATGGCAGCGATGAGATACGGCCGGTGGGATACGGTGCCTCTACACCAGCAGCCGTGTGTTTCCTTCCAGACACTGGGGCTCAGTTACATCCCCAACTCCCCCGCCCCTCACAGCTTTACCCCTGCCCCAGCCTACAGCCACAGCCTGCCCACCACGGAGACCCCAGCCACCAGCTACAGCCCACATCAGCTCCAGGACTGTCAGGATGGCCAGATCCCGCAGCACTATCCTGATTGTCCTGTGACGGCAGCCCTGGCGGATACCAGCGCTGCCACCGTTCAGAGCGGCTGCTACTCCTGGTCCAATGAGCTCAGGACCCAGACCCCTGCAGCCGCCTGCGGCCTTCAGTACAAACACCAGCTGGACATGGCCAAGCTGGAAGAGGCTCGGCAGTTCCTACAGGGCATGGACTACAGCAGAACCACCTGGCAGGACGATGACGGAGACACGATTCTGCACATCTACACCGCTAAGGGCCAGAGGGAGTACGCATTTGCTGCAGCCGAGAAGCTGCAGGAGCTCGGGCGTCTCGACTCCAAGGAGCACAAGGGCAagACCGCATTGCTGGTGGCAGTGACAGCCAATCAGCCAGAGATCATCCAGGACCTGCTCAGCCTGGGAGCAGATATGAGCATCTGCGACAACAAAGGACAGACTGCACTGCACCTGGCAGCCACATACGGATACCCTCAAATCATGCAGGAATTGCTGTCAGTGAACCCCAGGGTGGACATGGAGGCCCGCAATTTTGAAGGGCTCACCCCCTTGCATTGTGCAGTGATTTCCCACAGTGCCACGATGAAGGCTCTTactgcctcctcctcctcttcctcctcctcctggcAAACTGATGGCAGTCTGCAGACTCAGGCCAATAATAAACTGTTCTGTGtgcagctgctgctggaggCTGGAGCTTCCCCTATCAGccagGAAATCAAAAGCAACAAGACCGTTCTCCACTTAGCTGTGAAAGAGGGGAATATCCAGCTGGTGCATTTTTTCCTGAAAATCCAACTGCCAGACATGCAGGTTTTCATCAACATGAAGGCTCACGGGCACACAGCCCTACACATGGCAGCAGGGCTTCATGGAAACCCTCACCAGGAGGAGCTGATCCGCCTGCTGCTGAGCAGAGGAGCAGACCCCAGCATCCGCAACCTGGAGAACGACCAGCCCGCCCACCTGCTGCAGAGCGGCCAGCAGGGGGAAAAGCTCAAGCTCATCTTGAAGAAGAGAAATGCCTCCTCTAGGCGTCGTATCACATCCTTACAGGACCAAGAGTGACCAGGACTGTTTCAGTCCCACCGTTTATATCTCCCTTTACTTCTCTTAGGGACATCAAAGGCCTGCACATAGTTACGGGAAAAGCACAAGGCACAGCACTATTTCAAACAGTGAGGAAATAAAAACGAAAAAATTGATATTCATCGATAGGGGTGGACGATATTACGATATAACTGTGTCACACTATGGAGTTACGAGCCACGCATGAGCattattaatacttttattaatactTCTAAAGGCCTAACCAAGCATTAGAAGATCTTTTAAGTCGTAAAGTTGCCTAAAAAAAGTAGTGTCTTAATAATTCAGTTTGagagctaaaatgtgtttaattcatttattaaatgcattaaaatgcagcatttttaatttaatttaatttaatttaatttaatttctcaaAGGACATTAAAGGAAagtattacataaaaaatgtattctaaCTACACAGCTAGTTCTATTAATGCTGAAAGATTTGAACCTAAATGTAtgtgtataaaaacatatttgtgGTGGAAGGATACATGCAAAGTGTTATAAGGCAAAGTAgttccaaaaataaaacaactgttCCAACttcagacctaaaaaaaaaaaagttaaaatacaaAACTCGTTTTGTATGGACATTATATTGTcccagatatttaaatattaaaatatttaatattttaatttcaatgttttttttttcaacacaaatcaaacatttaatcTCTTCCAACCCTTTCATTTCATTACAGTTATCTACTTATTAtgcctattttttatatatatatattatttttgattCTTGTTACTGACCTGGAAATATTACACTCCATGTGTCCTTAAAGCTTTTagaatgttaatatttttttttttatataaaaatacttttactgcagagaaaacctaaaaaaaaagtaaactgcGAAACTTATAATGATTAAtagtattattgtaattttaagaccataTTATGGcactatataatgatataatgatcatataatatcataataatgtatttacaggtttttaaagagcagtaaactTTTAATTAGTAAGAATATTCACTTCACACTTCGAttggaaaataataaacaatgaacaagttaatttaacaaacaaaataattaataaaaccaCAGTTTTGAACAAACACAGAGGcatttttgaaaaaattttctcaaaaaaaaaattgagaaatcttgaggatttccaTTTAAGCAATGATTGAGGTCACGTCCCTATATC

Function

NR:

description
PREDICTED: NF-kappa-B inhibitor delta-like

GO: NA

KEGG:

id description
K14214 NFKBID; NF-kappa-B inhibitor delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674045.1 True 3143 mRNA 0.44 13 7736322 7759796

Neighbor

gene id symbol gene type direction distance location
LOC111193393 NA coding upstream 447715 7286540 ~ 7288607 (+)
apoc2 NA coding upstream 646904 7084787 ~ 7089418 (+)
LOC103042602 NA coding upstream 655167 7076615 ~ 7081155 (+)
LOC103043120 LOC108429949 coding upstream 684906 7049201 ~ 7051416 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding upstream 699576 7026293 ~ 7036746 (+)
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding downstream 88303 7848099 ~ 7866595 (+)
LOC111193438 NA coding downstream 109237 7869033 ~ 7881591 (+)
smg9 smg9,LOC107699520,LOC107595308 coding downstream 131979 7891775 ~ 7900812 (+)
spaca6 NA coding downstream 301167 8060963 ~ 8074397 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding downstream 385168 8144964 ~ 8150644 (+)
G97980 NA non-coding upstream 10172 7724230 ~ 7726150 (+)
G97982 NA non-coding upstream 14013 7721279 ~ 7722309 (+)
G97969 NA non-coding upstream 31500 7684613 ~ 7704822 (+)
G97965 NA non-coding upstream 243920 7491826 ~ 7492402 (+)
G97955 NA non-coding upstream 316701 7416279 ~ 7419621 (+)
G97988 NA non-coding downstream 1389 7761185 ~ 7761824 (+)
G98115 NA non-coding downstream 21762 7781558 ~ 7835204 (+)
G98117 NA non-coding downstream 31227 7791023 ~ 7793327 (+)
G98133 NA non-coding downstream 155723 7915519 ~ 7917730 (+)
G98185 NA non-coding downstream 260778 8020574 ~ 8096610 (+)
G97931 NA other upstream 605513 7127804 ~ 7130809 (+)
G97926 NA other upstream 666193 7068688 ~ 7070129 (+)
apoc1 NA other upstream 670293 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1054631 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1171319 6532516 ~ 6565003 (+)
G98636 NA other downstream 1552610 9312406 ~ 9312803 (+)
G98840 NA other downstream 2236408 9996204 ~ 10002046 (+)
G98845 NA other downstream 2300637 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2412757 10172553 ~ 10178459 (+)
G98967 NA other downstream 2733995 10493791 ~ 10498518 (+)

Expression


Co-expression Network