LOC103042523 (far1,LOC107590516,LOC103366393)


Basic Information

Item Value
gene id LOC103042523
gene name far1,LOC107590516,LOC103366393
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9214852 ~ 9268400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674047.1
CAGAAGCTGCGAGCggccggagagagagagagcgagagggagagagttagagtgagagagagagggaggaagaaccGGCGGCTCCGCGCGGACTGATTGATGATTAAGgTTGGGTTTAGGTGGATCCGTGAGTGTGTCGCTCTCTCGTCATGGCATGTATATCGGAATGGTACGCGGGGAAGAACGTGCTGATCACCGGGGCAACGGGCTTCATGGGGAAAGTTCTGGTGGAGAAGCTGCTGCGCTCGTGTCCCGAAGTTAAAGCCCTGTATCTGCTGGTTCGGCCCAAAGCGGGACAGTCCATGCAGGAGCGCGTCCAGGACATGCTAATGTGTAAATTATTTGACCGTGTGCGGGAGGATGACCCCGAGTTCCACCAGAAGATCATTCCGATTAGCAGTGAGCTAACGCAGCCCGGCCTGGCCCTCAGTGCTGACGACGTTCAGCAACTCGCTGACTGCATCAACATCGTCTTCCACTGTGCCGCCACCATCCGCTTCGACGAGCCGCTAAAACATGCGCTGCAGTTAAACGTTATTGCGACGCAGCAGCTCCTGGCGTTGGCGCAGCAGATGCAGCACCTGCAGGCCTTCATCCACATCTCTACAGCCTACGCCAACTGCAACCGCCGCCACATCGATGAGGTCATCTACCCCCCACCTGTCGAGCCAAAGAAGCTCATCGACTCGctcgaGTGGATGGATGACGCCATCGTTCGCGACATCACACCGCGACTGATTGGGGACCGGCccaacacctacacctacactaAAGCGCTGGCAGAGTGTGTGGTGCAGCAGGAGAGCAGCAAACTCAACATCGGCATCATTCGGCCCTCCATCGTCGGAGCCAGCTGGCAGGAACCATTTTCAgGCTGGATTGACAACTTTAATGGACCAAGTGGTGTCTTCATTGCGGTAACTATGTCTCTGCACTTTTACTTAATAAGTGAAGATAATAAGATAAGATACTATATAAgaaccCTGGCAAAGCAGGCTGGTACACAGCAAGTACACAGACCCAAATCTGCACTGGTTTACAACTGCACAACTGGGGGCATTAACCCGTTCCACTGGGGAGAGATTGAGCACCACGTCATGTCAACGTTTAAGCGGAACCCTCTGGAGCAGGCTTTCCGCCGGCCCAACGccaacatcacctccaactacCTTATCAACCAATACTGGATCCTCGTCAGCCACAAGTTCCCTGCACTGCTCTACGACCTCTTCCTGCGACTGTCCGGCCAGAAACCACAgatgaTGAGGATCTTTAACCGGCTGCATAAAGCGATTGGTCTGCTGGAGTATTTTAGCAGTCAGGACTGGGAGTGGAACTCTGACAACATGAACATGCTGCTGAATCAGCTCAGCCCAGAGGATCGGAAGaccTTTAATTTTGATGTTCGTCAGCTGAACTGGCCGGAGTACATAGAGAATTACTGCATCGGTACCAAGAAATACGTGCTGAACGAGGACATGTCCGACATCCCTGCAGCCCGGCAGCACTTACGCAAGTTGAGGAACATCCGCTACACCTTCAAcacagtgctgctggtgtttatcTGGCGGGTGTTCATCGCTCGCTCTCAGATGGCACGAAATATCTGGTATTTTGTTGTGAGTTTATGCTTCAAGTTCCTGTCGTACTTCAAAGCTTCCAGCACGCTGACCAACTGACCGCCGCCGCGGACCGCCCCCTTCCACACGCCGCTATCTCTAGCTGATCTCAGCATTCGTCCATCAGTGCTCGTCCCGACAGCCCAGCGCTCGTTCGCCcaactgtttttacagcttCGTCTCCTTTTATAACGAGAGtcctttcaaataaaaacttaaatatgCAAGACCCGCCCCTGTTACAACCCCGTAACACACCTGCTACAACCCCATTACAGCCCCTCATCTATGTTGTCGGTCTGAGTCCTGTCTGATCTGTCCTCAAACAAGGCCTTGACTTCTtcagattttgttttgtttgttttttttcttgatgacagtaataatgattattttagtctACTTGAATCACTACAGTGTTTAAAGATCTAAAGCTTGTTAAACCTCGGGATATGAAGGCATCTCTCCAGAACGCCTCAGCATTCTCATCCTTATCTGTGTGTATGaatttgtaagtgtgtgtgcaagtgtttaagtgtgagtgtgtttcatACTTTATGTACTTTACTCAGATCTGATGTTGTGTTTGAGTCTGTCGTTGCAgtttgtatgagtgtgtgtttatagaagTCCAGCTCGTTTCAGGGGGTCCACCAGTGTGATCAGGGCTCCACCCTGTATGTCTGCAGATGGAGAAAAATGATAATTTACAAAAAGCACTGTTCAATTCTTCTAGTAAAATCTGTGCAGGAATCTGAAACTCCCcaaatacagtaatttcatgCCAACTTG

Function

symbol description
far1 Predicted to enable fatty-acyl-CoA reductase (alcohol-forming) activity. Predicted to be involved in long-chain fatty-acyl-CoA metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in peroxisomal membrane. Predicted to be integral component of membrane. Predicted to be active in peroxisome. Is expressed in several structures, including nervous system; notochord; pronephric duct; solid lens vesicle; and ventral mesenchyme. Orthologous to human FAR1 (fatty acyl-CoA reductase 1).

NR:

description
PREDICTED: fatty acyl-CoA reductase 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674047.1 True 2411 mRNA 0.50 12 9214852 9268400

Neighbor

gene id symbol gene type direction distance location
cpsf6 cpsf6,LOC107729149 coding upstream 19132 9179785 ~ 9195720 (+)
LOC103035505 LOC108411721,LOC107658752 coding upstream 134614 9047865 ~ 9080238 (+)
ccdc107 LOC107555866 coding upstream 180551 9024387 ~ 9034301 (+)
krr1 krr1 coding upstream 288344 8916576 ~ 8926508 (+)
LOC111193444 NA coding upstream 319255 8862740 ~ 8895597 (+)
LOC111193395 NA coding downstream 94668 9363068 ~ 9365903 (+)
LOC103028562 ephb6,LOC108432347,LOC107724759,LOC107672963,LOC107549482,LOC107744289,LOC108270687 coding downstream 136420 9404820 ~ 9458769 (+)
LOC103028240 LOC108432345 coding downstream 204997 9473397 ~ 9508318 (+)
leng8 leng8,LOC107744285,LOC107672965,LOC107598384,LOC107700201 coding downstream 271835 9540235 ~ 9555329 (+)
tpi1 tpi1 coding downstream 298310 9566710 ~ 9578063 (+)
G98508 yeats4,LOC107555875,LOC107590554 non-coding upstream 35534 9178506 ~ 9179318 (+)
G98500 NA non-coding upstream 74272 9139334 ~ 9140580 (+)
G98498 NA non-coding upstream 117969 9086633 ~ 9096883 (+)
G98496 NA non-coding upstream 128269 9083589 ~ 9086583 (+)
G98630 NA non-coding downstream 19240 9287640 ~ 9292655 (+)
G98635 NA non-coding downstream 40858 9309258 ~ 9309691 (+)
LOC111193403 NA non-coding downstream 60507 9328907 ~ 9338005 (+)
G98657 NA non-coding downstream 106456 9374856 ~ 9375545 (+)
G98663 NA non-coding downstream 112569 9380969 ~ 9382738 (+)
G97931 NA other upstream 2084043 7127804 ~ 7130809 (+)
G97926 NA other upstream 2144723 7068688 ~ 7070129 (+)
apoc1 NA other upstream 2148823 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2533161 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2649849 6532516 ~ 6565003 (+)
G98636 NA other downstream 44006 9312406 ~ 9312803 (+)
G98840 NA other downstream 727804 9996204 ~ 10002046 (+)
G98845 NA other downstream 792033 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 904153 10172553 ~ 10178459 (+)
G98967 NA other downstream 1225391 10493791 ~ 10498518 (+)

Expression


Co-expression Network