LOC111193396



Basic Information


Item Value
gene id LOC111193396
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 575511 ~ 576556 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022674052.1
gggaggccaTCTATGTTGTCCCCACGCCAAGAGACCCTCATTGTTGACATGGTCCGTCAGAACAATTCAGTCAAACTCTGTGAAATACAGCAGAAGATCATTGACGACCATGTTGATTTTGAAGGCATCACCAGTATCAGCATTTCCACCATTGATCGTGTCCTAAAACGCAACAGGATGCGGATGAGGCAACTGTACAGAGTACCCTTTGAGCGCAACTCAGAAAGGGTCAAGGAGCAAAGATTCCACTATGTACAGAGAGTGTTTCAACTGGATTCCTCAGAACAACCacatgaatatatttatatggatgaagCTGGGTTCAATCTGAccaaaaggaggaggagaggccGGAATGTGATTGGCCAACGAGCCATTGTTACAGTTCCTGGCCAGCGTGGTGGCAATGTCACTTTATGTGCTGCAATCAGCAATCATGGTGTTCTCCACCATCATGCCACATTGGGGCCATACAACACTCAACACCTCCtgacatttttaagtgatcttcgGGATATTGTGTTAGGGTTTCAGCAGCAGGATCATGAACAGACAGAGCATCCTGTCTATGTCATTGTGTGGGATAATGTGAGTTTTCACCATGCCGTGCAGGTCAGAGAGTGGTTCACTAGAAACCAAGAATTCCTGAATGTTTTCCTACCACCATACTCCCCTTTCCTCAATCCAACAGAGGAGTTCTTCTCTGCATGGCGCTGGAAGGTTTATGACCGACAACCCTACACCAGGGAAAATCTCTTGCAGGCCATGGAACTGGCCTGTAATGATATAGGTGTGGATGCATGCCAAGCGTGGATCCGGCACACTAGAAGTTATTACCCACGCTGCCTGGCAAGGGAGAATGTGGCCTGTGATGTAGATGAAGTCCTGTGGCCTGACCCAGCACATCGACATGATGTTATAGAGTAGATATTGTATGCACTTTTGTtgtaaagtttatat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022674052.1 True 960 mRNA 0.47 2 575511 576556
Loading

Neighbor


gene id symbol gene type direction distance location
LOC103037419 LOC108429189,LOC108272415 coding downstream 2221 551438 ~ 573290 (-)
dcakd dcakd,LOC107667188,LOC107747896,LOC107717668,LOC107554516 coding downstream 30492 536446 ~ 545019 (-)
LOC103040905 NA coding downstream 199081 366617 ~ 376430 (-)
LOC103042121 LOC108432773 coding downstream 243364 301691 ~ 332147 (-)
mrap2 mrap2 coding downstream 333065 234312 ~ 242446 (-)
dnaaf3 NA coding upstream 122167 698723 ~ 711111 (-)
gnptg gnptg coding upstream 160180 736736 ~ 743730 (-)
il4r NA coding upstream 235552 812108 ~ 827863 (-)
LOC103030489 kcnc3b,LOC103030489,LOC108429201,LOC107667167,LOC103358372 coding upstream 302338 878894 ~ 969646 (-)
cluap1 cluap1,LOC107667210,LOC107718203,LOC107747891 coding upstream 632952 1209508 ~ 1223065 (-)
G96058 NA non-coding downstream 47750 527434 ~ 527761 (-)
G96057 NA non-coding downstream 48750 526407 ~ 526761 (-)
G96056 NA non-coding downstream 49228 525949 ~ 526283 (-)
G96051 NA non-coding downstream 84516 490376 ~ 490995 (-)
LOC111193405 NA non-coding downstream 143118 431659 ~ 432393 (-)
G96081 NA non-coding upstream 1936 578492 ~ 579159 (-)
G96171 NA non-coding upstream 60826 637382 ~ 723478 (-)
G96204 pdpk1b,pdpk1,LOC108429196,LOC108264442,LOC107747865,LOC107667172 non-coding upstream 176452 753008 ~ 760508 (-)
G96205 ube2i,LOC107677193 non-coding upstream 179328 755884 ~ 808525 (-)
G96202 pdpk1b,LOC108429196,LOC108264442,LOC107677174,LOC107718133,LOC107554309 non-coding upstream 193530 770086 ~ 776473 (-)
LOC103043490 NA other downstream 309917 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 1005451 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 1235145 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 3302140 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 3573447 4150003 ~ 4178426 (-)
dek dek other upstream 3867673 4444229 ~ 4453002 (-)

Expression


LOC111193396 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC111193396 Expression in each Bioproject

Bar chart with 6 bars.
LOC111193396 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.

Co-expression Network