LOC103038805


Basic Information

Item Value
gene id LOC103038805
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3923661 ~ 3925572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674053.1
GGATTTATACACTTCAATGGGAAACCAACTAGAGGAAATATTAAGAAactgtacattaaaaaaaggaacttTTTCAAGATATATTCTGAATACAAAGACTGTAATCGACGGAGACAGGCTTAAGAGAGAGActtttggagaaaaaaatgagagcaaaCCTCATAAAACCATTTTAATGGTTGGAGAAACCGGAACAGGGAAGTCTACTCTAATTAATTCCATCGTCAACTACATGCTGGGCGTCCAATGGGAAAACAAGATCTGGTGTGAGATCATAGAGACGAAAGAAAACCAACCAGATTCACAAACAAATACAGTGACTGTGTATGATGTTTTTGTTGAAAAGAGACaattctctttcactctcattGACACACCTGGATTTGCAAACACAGACGGGATTGAGAAAGATGCAAATATTGCTGAAACTTTACACGAGTTATTCAGATCCAAAGATGGAGTACCGGAAATTGATGCAGTGTGTCTTGTGGTGTCAGCAAAGATGACTCGACTTACAAACTTTCAGCAGCAGATATTTGATGCTGTTCTGTCTTTATTTGGTGTTGATGTAGAGAAAAACATTGTTGTGTTGATTACACATGCCCAGAATAAGCCAGTTAATGCCCTAAAGGCCATCAAAGCATCTCAGGTCAAATGTGCTAAAACTCCTAAAGGCAAGCCTGTGCACTTTTGCTTTGACAACTCTCACTGTGAAGAGTTTcaggatgatgatgaagatgatgaggaGGAGACAGATAGTGCTGAAAAGAACCACAAATACAAAGAGTTGTGggtaaaaaatgagaaaactaTGAAAGATTTTTTCGCTTTTCTGAACAATGCCACATCTATAAACGTAAAGCTGACTGAACATGTTCTGAGAAAACGCAAACAACTGACTGCCTCCATCACCAACCTAAAAGATCGAATCACACTGATAGAACTCCGAAAAACTGAGCTCAAACAGACAAAAGCAGCCTTGGagaaatgtgaaaaagaaaagaagaacaagaatgaCTTTGAATGTGAAGTTGAAGAGCCCTACAAAGAAAAAGTACCTGTACCATCTAGGCGGTGGTTGTTGGGTAAAAAAGCCACCTGCTGCAGAGTGTGTAAAGAGAACTGCCATTATCCTGGATGCTGGTGGGTCAGAGATCTCCGGTGGTGTAGTGTGATGTCAGATGGAAAGTGCACAGTGTGTACAGGGAAGTGTAAGTACACTGAACATGTTAAAGAGGGGAAAATGTATGTTCTGAAGACACGGAAGGTGAAGAAGAccattaaagatttaaaaaagaaatatgaggTTGAGTCAGGAGAGAAAATGAGTCTGAAGAGAAGACTTgagaatgaaataaaaatgtatgaaagaGAGAAGAACAAGCTGGTGGATGACAGTTATCAGTATATCATCAGTCTGGAAGAGATTGCTTTAAATCCCACTGCTGTTTCTACTCTTCAGCATCTGGACTTCCTCATAGAGAAAATGAAGGAAACAAAAGACAATAAGAGAGAGCAGAAATTCcaagaactgaaaaaaaaaaattgaaaataaaaccAGGAATGAGACCCCTGGTTTGGGACCAGTTGCTTAATTGGCaactgtgtgttttaaaatgttattactgCTGTTCATTATATCCTCAGTTTTTACGCAGAGCAGCAGTGACTGACTGAGCAGCTATCCGTCACAGAAACGGACTGTGTGGATAAAACCAGCATGATTTGTAAAAATTGGGCCACGACAGCCATGGGACAGACAACATATCTGCGGAATCACCACTATGCTGTTTTACTAGGGCAAGGAGTGAGAGTATCACATGctaagtgtaaaaaataaaaatctagtATGTAAGTATGTAAACCTCAGAGCAACTGACTCCACAATTACCTTGGAATCAAATCACTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674053.1 True 1912 mRNA 0.39 1 3923661 3925572

Neighbor

gene id symbol gene type direction distance location
e2f3 e2f3,LOC108429255 coding upstream 7942 3901689 ~ 3915719 (+)
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding upstream 63789 3759945 ~ 3859872 (+)
LOC103035455 LOC103035455,LOC108429251 coding upstream 182397 3653800 ~ 3741264 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 550975 3284027 ~ 3372686 (+)
cobl NA coding upstream 651058 3147369 ~ 3272603 (+)
tmem158 tmem158 coding downstream 236302 4161874 ~ 4164337 (+)
LOC103035111 NA coding downstream 244874 4170446 ~ 4194866 (+)
decr1 decr1,LOC107580031,LOC107756153,LOC107704989,LOC107705494 coding downstream 276391 4201963 ~ 4225743 (+)
LOC103036464 kiaa0319 coding downstream 471519 4397091 ~ 4421912 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107666889,LOC107717377,LOC107668317 coding downstream 533980 4459552 ~ 4488435 (+)
LOC111193419 NA non-coding upstream 168891 3753172 ~ 3754770 (+)
LOC111193420 NA non-coding upstream 170964 3751492 ~ 3752697 (+)
G96915 NA non-coding upstream 195088 3727932 ~ 3728573 (+)
G96912 NA non-coding upstream 207260 3713518 ~ 3716401 (+)
G96888 NA non-coding upstream 340896 3533546 ~ 3582765 (+)
G97000 NA non-coding downstream 7239 3932811 ~ 4195776 (+)
G97029 NA non-coding downstream 170562 4096134 ~ 4165899 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding downstream 270376 4195948 ~ 4197937 (+)
G97038 NA non-coding downstream 300368 4225940 ~ 4287454 (+)
G97042 NA non-coding downstream 316958 4242530 ~ 4256999 (+)
LOC111193421 mboat1 other upstream 24742 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 484935 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 3115087 799224 ~ 808574 (+)
ndufaf6 ndufaf6 other downstream 1039898 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 1881996 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2354750 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2606944 6532516 ~ 6565003 (+)
adar adar,LOC107723500 other downstream 2728778 6654350 ~ 6681691 (+)

Expression


Co-expression Network