LOC111193407 (LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376)


Basic Information

Item Value
gene id LOC111193407
gene name LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 777829 ~ 795543 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674065.1
ACATCTCTGTACTGGAAACCGGGATCTGGCGCCCGCTGTCGGACAGTCTGAGAAAGTCTCAGCCTGAACTGCCCAACACCCAGTCTGGAGCTGGAGGCTGTCGGCGGCGCTCAGCTCGTCCCGCAGCTTCATCCGGAGCGCAGGAGTTCTCGGTCGGTCGGGCGGATCATGCTCTCTCTGAGACCGTGACCGTCCCGTTATTAACCTCAGCAGCGCGCCGGGGACCTGCGGACTCTCCAGACACTCAGTTCACTTCTGTTAGTCCTCTATGTAAAACCCACAGCCCGTGCTCGAGTCTGCGTTAGCTGGAGAGCTAACTCCTGCGCGGGGCGGAAGGGAGAACATGGCCGAGTGTCAGTGCGACGCGTCCGGCCACGGCTCTCGGCGCTGCCCGCTCCTGTCTACCGGAGAGAGCTCATCCAAGTGGGTGCGCCTTAACGTGGGTGGCACCTATTTCCTGACCACGAAGCAGACCCTGAGCCGGGAGCCCAAGTCCTTCCTGTACCGGCTGTGCCAAGCGGACCCCGAGCTGGACTCCGACAAGGATGAATCAGGGGCGTATTTGATCGACAGAGATCCGGTGTATTTTGGGCCCGTGCTGAATTACCTGCGACACGGAAAGCTTGTCCTCAACAAGAATCTGACGGAGGAAGGTGCTCTGGAAGAGGCAGAGTTCTACAACATTACTTCATTAATTAAACTCATCAAGGAAAAGATTAGAGAACGAGATGCCAAGATTACACATACTCCAGTGAAGCATGTGTACCGCGTGCTGCAGTGTCAGGAGGAGGAGCTCACTCAGATGGTCTCCACAATGTCGGACGGGTGGAAGTTTGAGCAGCTTGTCAGTGTAGGTTATGGGCGAGCACAGAAGTCAGAGTTTCTCCTCATTGTGTCTCGGGAAGTGAAGGGGGAGGAGTCGAGTCAAACTCACCCCGCCCACAGCGGAGAGctggTCAACATTGGCTCCTCCTATAACTATGGTAATGAGGACCAGGCAGAGTTTCTGTGTGTTGTCTCCAAGGAGCTTCACAACCATTCATATGGGAACAACAGTCAACCAAGTGAAAAAGCCAAGcTACTCCAGGAGCGAGGGTCCAGAATATGAGCTCCTTAAACACCAAAACCCTCCAACATATCAGCACTCAAACCGGAACATTCCACGAGCATGTGCAGAACATGTAGCATGGCCACAGATGTGCAGATTGTGTGTGAACACGGACCAAACACGAACACACCAGCGCTGAGCTGGTCTACTGTAGCTGTGTCTTTTTATGCAACAGATTCATTCCAATTCCACTATAGGCCCTGCACAGTGATTTGGACTTTACCATGTGCTTTCAGTATTCTAGGGAAATTATTTCAGGTTGATTTCATGTCTACAACAATACAACAGTCAGTTTATTAAGAATCTAAATGTTCACAGACAGAATATgtagaatatgaatatgaatattaatattaagccACACAGTGCACCATAGACTTAACTTTGGCAATCTAATATCTGAAAAAcatcctttttttaaagaattctgTAACTAAACAAAATTGATTTACGTGTTAATGCACTTAAAATGATACGTGATCACTGTGCAAGACCTTTAAACCGTAATATTGTGTTCGTAATATTCTGTTTTTCAATCCTATACTGTAGAAGAGGAGGACATGACTGATCTAAATCTCAGGGATTTGATCCACATGTGGGGAAAAAACAAGCAATCACTTCTCTTTGACACTCTGTCCCTGCAGGCCTTAACCCAGCCTTATGTAATCTCACTTCACCCTCTATCCAGTAAATCCATGTTTGAATGcaatattttataaactaataTTTATAATGGGTATATtacatgttacatttaaatcaaatgcattccaattacatttttcagcagactgataaaaacaataataacatatacTTGTATTAATAGTgcattattgttgttattattattattattattattattattattaatcaaactgtatatttgttttaaactgtttgtttgcccctttaaaaaatattttattgcacGGTGCTTTTTTTCATCTGATCAGTAGAGGTAAACAGGTTATACCACAGGTTTAATAATATAAAGCAGGTAGAAAAGACaatcattttaatttcagtgttttggCATTTAGTCGAATATAATTCCAGTCTCCATTTTCTGCTTTCCAACTCCTTCCTATGTGCTGTCAATAATACCTTAAAAACTAATCCTGTACACCCATTGAAGTCTCTGCGTATATAaacatttgcacacacacacacacacacacacacacattcaagagTAAGGTATTTCACTTTTTGCTGAGTCACACAAATAccccaaaacagaaaaaagcacattttcacAAGCTGTCACTCTTACACTGCTGTACACAGAGTGTTATGCTataaagctgtttttaacaaacctc
>XM_022674066.1
AACCGGGATCTGGCGCCCGCTGTCGGACAGTCTGAGAAAGTCTCAGCCTGAACTGCCCAACACCCAGTCTGGAGCTGGAGGCTGTCGGCGGCGCTCAGCTCGTCCCGCAGCTTCATCCGGAGCGCAGGAGTTCTCGGTCGGTCGGGCGGATCATGCTCTCTCTGAGACCGTGACCGTCCCGTTATTAACCTCAGCAGCGCGCCGGGGACCTGCGGACTCTCCAGACACTCAGTTCACTTCTGTTAGTCCTCTATGTAAAACCCACAGCCCGTGCTCGAGTCTGCGTTAGCTGGAGAGCTAACTCCTGCGCGGGGCGGAAGGGAGAACATGGCCGAGTGTCAGTGCGACGCGTCCGGCCACGGCTCTCGGCGCTGCCCGCTCCTGTCTACCGGAGAGAGCTCATCCAAGTGGGTGCGCCTTAACGTGGGTGGCACCTATTTCCTGACCACGAAGCAGACCCTGAGCCGGGAGCCCAAGTCCTTCCTGTACCGGCTGTGCCAAGCGGACCCCGAGCTGGACTCCGACAAGGATGAATCAGGGGCGTATTTGATCGACAGAGATCCGGTGTATTTTGGGCCCGTGCTGAATTACCTGCGACACGGAAAGCTTGTCCTCAACAAGAATCTGACGGAGGAAGGTGCTCTGGAAGAGGCAGAGTTCTACAACATTACTTCATTAATTAAACTCATCAAGGAAAAGATTAGAGAACGAGATGCCAAGATTACACATACTCCAGTGAAGCATGTGTACCGCGTGCTGCAGTGTCAGGAGGAGGAGCTCACTCAGATGGTCTCCACAATGTCGGACGGGTGGAAGTTTGAGCAGctggTCAACATTGGCTCCTCCTATAACTATGGTAATGAGGACCAGGCAGAGTTTCTGTGTGTTGTCTCCAAGGAGCTTCACAACCATTCATATGGGAACAACAGTCAACCAAGTGAAAAAGCCAAGcTACTCCAGGAGCGAGGGTCCAGAATATGAGCTCCTTAAACACCAAAACCCTCCAACATATCAGCACTCAAACCGGAACATTCCACGAGCATGTGCAGAACATGTAGCATGGCCACAGATGTGCAGATTGTGTGTGAACACGGACCAAACACGAACACACCAGCGCTGAGCTGGTCTACTGTAGCTGTGTCTTTTTATGCAACAGATTCATTCCAATTCCACTATAGGCCCTGCACAGTGATTTGGACTTTACCATGTGCTTTCAGTATTCTAGGGAAATTATTTCAGGTTGATTTCATGTCTACAACAATACAACAGTCAGTTTATTAAGAATCTAAATGTTCACAGACAGAATATgtagaatatgaatatgaatattaatattaagccACACAGTGCACCATAGACTTAACTTTGGCAATCTAATATCTGAAAAAcatcctttttttaaagaattctgTAACTAAACAAAATTGATTTACGTGTTAATGCACTTAAAATGATACGTGATCACTGTGCAAGACCTTTAAACCGTAATATTGTGTTCGTAATATTCTGTTTTTCAATCCTATACTGTAGAAGAGGAGGACATGACTGATCTAAATCTCAGGGATTTGATCCACATGTGGGGAAAAAACAAGCAATCACTTCTCTTTGACACTCTGTCCCTGCAGGCCTTAACCCAGCCTTATGTAATCTCACTTCACCCTCTATCCAGTAAATCCATGTTTGAATGcaatattttataaactaataTTTATAATGGGTATATtacatgttacatttaaatcaaatgcattccaattacatttttcagcagactgataaaaacaataataacatatacTTGTATTAATAGTgcattattgttgttattattattattattattattattattattaatcaaactgtatatttgttttaaactgtttgtttgcccctttaaaaaatattttattgcacGGTGCTTTTTTTCATCTGATCAGTAGAGGTAAACAGGTTATACCACAGGTTTAATAATATAAAGCAGGTAGAAAAGACaatcattttaatttcagtgttttggCATTTAGTCGAATATAATTCCAGTCTCCATTTTCTGCTTTCCAACTCCTTCCTATGTGCTGTCAATAATACCTTAAAAACTAATCCTGTACACCCATTGAAGTCTCTGCGTATATAaacatttgcacacacacacacacacacacacacacattcaagagTAAGGTATTTCACTTTTTGCTGAGTCACACAAATAccccaaaacagaaaaaagcacattttcacAAGCTGTCACTCTTACACTGCTGTACACAGAGTGTTATGCTataaagctgtttttaacaaacctc

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD5-like isoform X1

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21914 KCTD2_5_17; BTB/POZ domain-containing protein KCTD2/5/17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674065.1 True 2436 mRNA 0.44 7 777829 795543
XM_022674066.1 False 2309 mRNA 0.43 6 777845 795543

Neighbor

gene id symbol gene type direction distance location
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding upstream 1341 753085 ~ 776488 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding upstream 27464 744385 ~ 750365 (+)
LOC103035039 NA coding upstream 46394 715242 ~ 731435 (+)
LOC103035662 tnnt1,LOC108429193 coding upstream 79095 685850 ~ 698734 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding upstream 95524 652624 ~ 682305 (+)
cog7 cog7,LOC107717425,LOC107747870 coding downstream 45325 840868 ~ 864588 (+)
LOC111193408 NA coding downstream 148330 943873 ~ 948585 (+)
nlrc3 nlrc3 coding downstream 224591 1020134 ~ 1209397 (+)
wdr90 wdr90,LOC107677127 coding downstream 428633 1224176 ~ 1271502 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding downstream 482241 1277784 ~ 1302779 (+)
G96116 gnptg non-coding upstream 34090 736741 ~ 743739 (+)
G96073 NA non-coding upstream 191717 585905 ~ 586112 (+)
G96061 NA non-coding upstream 198998 578494 ~ 578831 (+)
LOC111193406 NA non-coding upstream 244760 531857 ~ 533069 (+)
G96021 NA non-coding upstream 246864 530684 ~ 530965 (+)
G96124 NA non-coding downstream 13778 809321 ~ 809530 (+)
G96132 NA non-coding downstream 39939 835482 ~ 836102 (+)
G96281 NA non-coding downstream 546018 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 548494 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 569241 1364784 ~ 1456887 (+)
LOC103040575 ube2i,LOC107677193 other downstream 3681 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2593508 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3069447 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4169927 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5012025 5807568 ~ 5850530 (+)

Expression


Co-expression Network