cog7 (cog7,LOC107717425,LOC107747870)


Basic Information

Item Value
gene id cog7
gene name cog7,LOC107717425,LOC107747870
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 840868 ~ 864588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674069.1
TGTTTTCACCCGAACGCGACAACATAGGGCACACCCCGGACCCTGGCTCTGTAAACATCAGCTGCGTTAGCTtctgtttctgtgattttgggagattttaaagtttatttttcaaACGGTAAAGCGCAGTTTAACGCTGGAGGAGGCGGTCGCGCTGCTGGAGCTGTACCTGGTTGTTATGGTGATTTCTTTCTCCTGGGCTGTTTATTTTCTCTTCGTGTCTAAACCAGGAATAGGGAAGAACTACAGGGTGGACTGAGGAGCTCTTCAGCTGCAGGTTTTTGAGATGGAACAGCTGAGGTAGCTAGTGGTTTCCAGTTTAAAGCTTTAAACATGGACTTCTCAAAGTTTCTTGCGGATGATTTCGATGTGAAGGATTGGGTGAATGGCGCATTTAAAGTGGCGCAGCAAGAAGCGCCTGGAAGAGCTGATGCGCATGCAGCGACTCTCGTCATGAAGCTTCAGCTGTTTATTCAAGAAGTTAACAACTCGATAGAAGagaGCAGCATTCAGGCCCTGCAAAACATGCCACGCGTGTTGAGGGATATAGAGGCTCTGAAGCAAGAGGCTTCGTTCCTGAAGGATCAGATGACTATGGTGAAAGAAGACATCAAAAAGTTTGAACAGGACACACTGCAGTCCATGCAGGTGCTGGTGGAGATTGATCAAGTGAAGTCTAGGATGCAGTTAGCAGCTGAGGCTCTACAGGAAGCAGATAAATGGAGCACGCTTAGCGCTGACATTGAGGAGACGTTCAagacacagGATGTGGCTGTGATCAGCAGTAAGTTGGCAGCGATGCAGAGCAGTCTGGCCATGCTGGTGGATACTCCAGACTACAGCGAGAAGTGTGTGCAGCTGGAGGCTCTCAAAAATAGACTTGAGGCTCTCGCCAGCCCTCAGATAGTCTCTACTTTTAACACACTCTCTACAGATCAAGCCAAGCTGTTTGTGCGAGTTTTCACAGAAATAGACAGAATGCCTCAGCTATTGGCTTACTACTATAAGTGCCACAAGGTGCAGCTGCTGAATGTGTGGGAGAGTGTGTGTCAGTCTGACGCTCCTCTACAGCAGCAGCTCTCAGAGTTTTATGACACACTCCTCTCAACTTGGCACACACAGTTACAGTGGACTGGCCAgGTCTTTAAAAACCCCTATGAGGTGGTGACCGTACTGATGATCCAAACTCTGGGTGCCATGGTTCCATCCATCCCAGACAGCATTGCAGCAGCACTAGAATGCTGCCCTGCTGAGGGCCGTCTGGAGACAATCCTGGAACTCCATCAGACAGCTGCCAACTTCAGCCGCAGCCTGGAAACTGCAATGCAGCCGCACCTCAGTGAGTGTAACCTTTTGAAGGTGTGTGAACTGGTGTCGTGTGTGTATTCACcatataaaagttatcagcTGCAGTATGGAGAACTAGAGGAGACCAACCTACTGATCCAACTCAGTGCTGTACCACTGGAGCGTGGGGAGGTCTTGGATTGTGTGCTGGAGCTCACACACTCTGTACAGAAGGTGTTTGGCCTGGCAGCCGCTGCTGTGGATCGCTGTGTAAAACTTACAGATGGACTGGGAGTGTGTGGCCTCATCAAAGCTCTTCGTGCACTGTTCAGCAAATATGTGTCAGATTTCTCTGTCactcttcagtcaatcagaaagAAGTATAAATTTGAGGAAGCCCCTACCTCTGAAGTGTTCACTGAGGATTGGACAGCTTTCCAGAATTCTGTCAGGATAATTGCTACCTGTGGGGAGCTTCTCAGACAGTGTGGGGCTTTTGAGCAGCAGCTTTCAAACAAGATTCTTGGAAAGGCAGGGCGATTTCTGTGGGAGGGGTTTAACCCAAGAAGTCTGAGCGGTCTGCAAGAGGGTGGAGCTGAGAGACGGGGCCAGAAGAACCCATGGCAGGAATATAATTacctgcagcagagcagcatgGCGGAGTACAATAATCTGCTGGAAACTCTGCACACCCTCAAGGAGAAAGGCACTGGAAACTCCAGCCTGCTGTCTGAGACTCGTGCTGCTCTGACCCGTCTGAACCAGCAGGCCAATCAGCTCGCCTTTGACTCTGTGTTTCTGCAAATCAAACACCAGCTCTGCCTCGCCAATAAGCCAGAGTTTCGGGGTTCTGCTGGTCTGGGtgaaacactgaatgaaaacCTACCAACCTTCAGTCTCTCGCCACAGGAGTACATTACTAACATTGGGCAGTATATCATGTCTCTTCCACTGCATTTGGAGCCATTTGTGACCCAGGAGGACCCAGCACTGGAACTGGCCTTACACACAGGAAAACTACCATATCCACCTGAGCAAGGTGATGGTCCGGAGCTGGAGAACACAGCAGATTATTGGCTGGGTTCAATAGCCAGGGCGACCATGCAGACATACTGTGATGTTATTCTGCAGATTCAGGAGCTGAATCCGCATTCAACAAAACAACTGGCTACTGATATCGattacCTAAGCAATGTAATGGATGCACTGGGGCTGCAAACATCTAGAACTCTCCAGAACATCACCACTCTTCTCCGGGCCAAACCTGAAGAATTTCGCCAGACTGCCAAACCCTTGCCCCGCAGACTGTCCTCCACCGTTGCTGCCATGCGGGGCATTGAgtactaaaaaaacaacagagattttctctttcatttgtttttccttttttttttcctgtctgaACCGTGGCCTCTGCATGCTTTATCAGCAAACTCTCTTTCTTAATTATACAGAAATGTCAGCTGaccaatttttttaaagttgtctAACAGATGTGAGTGATGAGGGGTGAAATATAACTGTGCTGATGggtgatataatataatatctatgtgaaataaattttatttgagTGAATCTGTAGATGCAGTTTGGGAGTTTGTTCATTTATGTGGAGATAAAGCAGGATCTCTGTGGTTTGGGAACACTAGCTTCTCtactgtgtctgtctctctttgctCTGCTGTTACTGGATTTCCTTTTTCATATTTatgaactaaataaacaaacacttgTTTGTGTTTACAGTGA

Function

symbol description
cog7 Predicted to be involved in Golgi organization and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIe. Orthologous to human COG7 (component of oligomeric golgi complex 7).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 7

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20294 COG7; conserved oligomeric Golgi complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674069.1 True 3039 mRNA 0.47 19 840868 864588

Neighbor

gene id symbol gene type direction distance location
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding upstream 45325 777829 ~ 795543 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding upstream 64380 753085 ~ 776488 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding upstream 90503 744385 ~ 750365 (+)
LOC103035039 NA coding upstream 109433 715242 ~ 731435 (+)
LOC103035662 tnnt1,LOC108429193 coding upstream 142134 685850 ~ 698734 (+)
LOC111193408 NA coding downstream 79285 943873 ~ 948585 (+)
nlrc3 nlrc3 coding downstream 155546 1020134 ~ 1209397 (+)
wdr90 wdr90,LOC107677127 coding downstream 359588 1224176 ~ 1271502 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding downstream 413196 1277784 ~ 1302779 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding downstream 457526 1322114 ~ 1415632 (+)
G96132 NA non-coding upstream 4766 835482 ~ 836102 (+)
G96124 NA non-coding upstream 31338 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 97129 736741 ~ 743739 (+)
G96073 NA non-coding upstream 254756 585905 ~ 586112 (+)
G96061 NA non-coding upstream 262037 578494 ~ 578831 (+)
G96281 NA non-coding downstream 476973 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 479449 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 500196 1364784 ~ 1456887 (+)
G96273 NA non-coding downstream 517837 1382425 ~ 1421881 (+)
G96289 NA non-coding downstream 527420 1392008 ~ 1392358 (+)
LOC103040575 ube2i,LOC107677193 other upstream 32294 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2524463 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3000402 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4100882 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4942980 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 5415734 6280322 ~ 6382717 (+)

Expression


Co-expression Network