rhot2 (rhot2,LOC107677299,LOC107556678)


Basic Information

Item Value
gene id rhot2
gene name rhot2,LOC107677299,LOC107556678
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1277784 ~ 1302779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674079.1
CAGTGTCCGGCAGGGGGCGCTGAGCTCCGGCTTGATCTGTGCGAAGCGGACGGTTTCTCCTTGGACGGGAAatgggtcagagagagaggaggagagcggTTTGAATTAGTATAAACCTCAGTTTAGAGCGTTCACTCAGGATCAGGAGTGATTTATAAACCTGGCAGAGAGATCCGGAGCGGAACATGAAGCGCGATGTGCGGATCCTGCTGCTGGGGGAGCCCAAGGTGGGGAAGACCTCTCTCATCATGTCTCTGGTAGGAGAGGAGTTTCCTGACGTGGTTCCCCTGCGAGCTGAAGAGATCACCATACCTGCTGATGTCACGCCTGAGAAAGTGCCCACACATATAGTAGACTACTCTGAGACTGAGCAGTCTGATGAAGTGCTTAGACAAGAGATTGTTAAGGCTAATGTGGTTTGTGTGGTGTATGACGTAACGCAAGAGGAAACCATCGACAAGaTCAGGACTAAATGGATCCCGCTTGTGAACGGTGGTGCAGAAAAAGGCAGCAAGATTCCCATCATCCTTGTGGGCAACAAGTCCGACCTGCGCTCTGGCAGCTCCATGGAAACCATCCTGCCGATCATGAACCAGTTCTCTGAGATTGAGACCTGCGTGGAGTGCTCTGCTAAAAACCTGAAGAACATTTCTGAGCTGTTCTACTACGCACAGAAAGCTGTCCTGCACCCTACTGCACCTCTTTATGATCCTGAGGACAAACAGctGAAACCCCAGTGTGTTCGTGCCCTCAGTCGGATCTTCAGCATATCTGATCAAGACAACGATCGAATTCTCAGTGATGCTGAGCTCAATTACTTCCAGAAATCCTGTTTCGGGAACCCGTTAGCCCCTCAGGCTCTGGAGGATGTAAAAACAGTAGTGTGGAAAAACACCAGTGATGGAGTGCAGGACAACGGCCTGACGCTTAACGgttTCCTGTTTCTCAACACACTTTTTATCCAGAGAGGACGTCATGAGACTACGTGGACCATCCTTCGCAAGTTTGGTTATGACGATACACTTGAACTTACAGATGACTACCTCTATCCACAGTTACGAGTGCCTGTCGGTTGTACGACAGAGCTGAATCATCTCGGATATCAGTTCCTTCAGAGACTTTTCGAAAAGTATGATGAGGATAAagactctgctctctctccAGTGGAACTGAGGAATCTGTTTGGCGTGTTTCCCTACATGCCCTGGAGCGAGTCTGTGTACAGCAGTGTCCACACCACAGAGGAGACGTACATCTCTCAGCGAGGCTACCTCTGCCAGTGGACGTTGTCTGCGTACCTGGATATACACAGGTGTCTGGAATACCTGGGCTACCTGGGTTACCCCATTCTAATGGAGCAGGACTCTCAGACGTCTGCAGTTACAGtaacaAGAGAAAAAGCTGTAGATCTGGAAAAGGGGCAGACACAGcgctctgtgtttctctgcaaGGTGATTGGTCCCCGTGGGAAAGGAAAGACCGCCTTCCTACAAGCCTTCCTGGGCCGGAGTTTTGTGagtGACGAGCGCAATCCCAGTGCCTTCTCTCTCTACACCATAAACACTGTCACTGTTGCCAACCAGGAGAAGTATCTCATCCTGGAGGAAGTCGATGTGGAAACAGAGTTCCTGAAGGcggcggatgcagcgtgtgatGTTGCCTGTCTGATGTATGATGTCAGCGACCCAGACTCCTTTAACTACTGTGCTAGTATTTATAAGcagCACTACATGGATCGCGGGGTGCCGTGTGTGGTTGTAGGCTCCAAGATCGACCTGCCAGAAGTGAAGCAACACCACGGCATGAGCCCCGCTGAATTTTGCTACAAACACAGGCTCCCTGCTCCACTGTGCTTCTCCACAGTGCACACACAGAGCAACACGCACATCTACACCAAGCTGGCCTGGGCTGCTATGTATCCGCACCTGAATGGTTCAGACATGAGCAGCACTTCTTTCTGGCTTCGTGTGACTCTTGGGGCTGCAATCGCGACTGTGCTGGGCTTTGCCTTCTACAGAGCTTTCTTCAGacacaaataacacacacacacacacgctccagCGACATTCTTTGATCATCTCATTCTCTTCAGTTGTTGGCCCTCCCTctgttctttctctgtctgtctctctctatcacacacacacacacacacataaacacacagtctGTCTGCCTTATTGTGTCATTTAAGGACAGGCGTccccaggagacgtggaggtaAGCGTCAGAGTGGAAGCCCAGTCTCTGTGGCTGTGGTCACCAGGACGTGGGACAGCTCTGTACCGCTCCAGTGGGACAAATCCTGTTATATATCCTGATGTAGCTGCAAACTTCATGCTGGAGTAGAAAGCTGAGTTCATGATCACCATTTATGGTGGATGTTTGACCTGATGTTTTGCCAAATTGAGCTGCTTTGCTTAAGATGAGGCCTCCGCGCACCTGACAGTGTCAataatggagagaaagagagagaggtggagaatgtgtgtatgaaagagtgtatgagtgtgaatgagggagagctgctgctgctgcagttgtattgaattattttatttaggtaGACTCTTTTCCTGATTGCCAATTCAAGCAAGCTGTTTTTTGCATAATAATGATGACTGACAGCGAAGAAGACTTTccgttgtattttattttatttttttcccagaaaagCTGGTTTTGGACCATCTGCACTTATATTTACACCTTCATACAGTGATTTGGCCCCTTATGAGAGACCAAGCCATCTTTTATAACAAGTCagataaaaatcaacaaaagcaTTGAGTGATTGGATTTTTTAAAGGGAATTCCACCAGGCTTTCAAAATAACTGCTTAATTTGAGGTTTGATGTGAAACAATATTCCGttgttttaaatagatttaCCCAGAGTTAGTGATAATAGAATTTGATGATCTCAATGTCTTCTGCACCCATGTAAagcaaatacaaaaattaaGGTACAAA
>XM_022674080.1
TCAGTGTCCGGCAGGGGGCGCTGAGCTCCGGCTTGATCTGTGCGAAGCGGACGGTTTCTCCTTGGACGGGAAatgggtcagagagagaggaggagagcggTTTGAATTAGTATAAACCTCAGTTTAGAGCGTTCACTCAGGATCAGGAGTGATTTATAAACCTGGCAGAGAGATCCGGAGCGGAACATGAAGCGCGATGTGCGGATCCTGCTGCTGGGGGAGCCCAAGGTGGGGAAGACCTCTCTCATCATGTCTCTGGTAGGAGAGGAGTTTCCTGACGTGGTTCCCCTGCGAGCTGAAGAGATCACCATACCTGCTGATGTCACGCCTGAGAAAGTGCCCACACATATAGTAGACTACTCTGAGACTGAGCAGTCTGATGAAGTGCTTAGACAAGAGATTGTTAAGGCTAATGTGGTTTGTGTGGTGTATGACGTAACGCAAGAGGAAACCATCGACAAGaTCAGGACTAAATGGATCCCGCTTGTGAACGGTGGTGCAGAAAAAGGCAGCAAGATTCCCATCATCCTTGTGGGCAACAAGTCCGACCTGCGCTCTGGCAGCTCCATGGAAACCATCCTGCCGATCATGAACCAGTTCTCTGAGATTGAGACCTGCGTGGAGTGCTCTGCTAAAAACCTGAAGAACATTTCTGAGCTGTTCTACTACGCACAGAAAGCTGTCCTGCACCCTACTGCACCTCTTTATGATCCTGAGGACAAACAGctGAAACCCCAGTGTGTTCGTGCCCTCAGTCGGATCTTCAGCATATCTGATCAAGACAACGATCGAATTCTCAGTGATGCTGAGCTCAATTACTTCCAGAAATCCTGTTTCGGGAACCCGTTAGCCCCTCAGGCTCTGGAGGATGTAAAAACAGTAGTGTGGAAAAACACCAGTGATGGAGTGCAGGACAACGGCCTGACGCTTAACGgttTCCTGTTTCTCAACACACTTTTTATCCAGAGAGGACGTCATGAGACTACGTGGACCATCCTTCGCAAGTTTGGTTATGACGATACACTTGAACTTACAGATGACTACCTCTATCCACAGTTACGAGTGCCTGTCGGTTGTACGACAGAGCTGAATCATCTCGGATATCAGTTCCTTCAGAGACTTTTCGAAAAGTATGATGAGGATAAagactctgctctctctccAGTGGAACTGAGGAATCTGTTTGGCGTGTTTCCCTACATGCCCTGGAGCGAGTCTGTGTACAGCAGTGTCCACACCACAGAGGAGACGTACATCTCTCAGCGAGGCTACCTCTGCCAGTGGACGTTGTCTGCGTACCTGGATATACACAGGTGTCTGGAATACCTGGGCTACCTGGGTTACCCCATTCTAATGGAGCAGGACTCTCAGACGTCTGCAGTTACAGtaacaAGAGAAAAAGCTGTAGATCTGGAAAAGGGGCAGACACAGcgctctgtgtttctctgcaaGGTGATTGGTCCCCGTGGGAAAGGAAAGACCGCCTTCCTACAAGCCTTCCTGGGCCGGAGTTTTGTGagtGACGAGCGCAATCCCAGTGCCTTCTCTCTCTACACCATAAACACTGTCACTGTTGCCAACCAGGAGAAGTATCTCATCCTGGAGGAAGTCGATGTGGAAACAGAGTTCCTGAAGGcggcggatgcagcgtgtgatGTTGCCTGTCTGATGTATGATGTCAGCGACCCAGACTCCTTTAACTACTGTGCTAGTATTTATAAGCACTACATGGATCGCGGGGTGCCGTGTGTGGTTGTAGGCTCCAAGATCGACCTGCCAGAAGTGAAGCAACACCACGGCATGAGCCCCGCTGAATTTTGCTACAAACACAGGCTCCCTGCTCCACTGTGCTTCTCCACAGTGCACACACAGAGCAACACGCACATCTACACCAAGCTGGCCTGGGCTGCTATGTATCCGCACCTGAATGGTTCAGACATGAGCAGCACTTCTTTCTGGCTTCGTGTGACTCTTGGGGCTGCAATCGCGACTGTGCTGGGCTTTGCCTTCTACAGAGCTTTCTTCAGacacaaataacacacacacacacacgctccagCGACATTCTTTGATCATCTCATTCTCTTCAGTTGTTGGCCCTCCCTctgttctttctctgtctgtctctctctatcacacacacacacacacacataaacacacagtctGTCTGCCTTATTGTGTCATTTAAGGACAGGCGTccccaggagacgtggaggtaAGCGTCAGAGTGGAAGCCCAGTCTCTGTGGCTGTGGTCACCAGGACGTGGGACAGCTCTGTACCGCTCCAGTGGGACAAATCCTGTTATATATCCTGATGTAGCTGCAAACTTCATGCTGGAGTAGAAAGCTGAGTTCATGATCACCATTTATGGTGGATGTTTGACCTGATGTTTTGCCAAATTGAGCTGCTTTGCTTAAGATGAGGCCTCCGCGCACCTGACAGTGTCAataatggagagaaagagagagaggtggagaatgtgtgtatgaaagagtgtatgagtgtgaatgagggagagctgctgctgctgcagttgtattgaattattttatttaggtaGACTCTTTTCCTGATTGCCAATTCAAGCAAGCTGTTTTTTGCATAATAATGATGACTGACAGCGAAGAAGACTTTccgttgtattttattttatttttttcccagaaaagCTGGTTTTGGACCATCTGCACTTATATTTACACCTTCATACAGTGATTTGGCCCCTTATGAGAGACCAAGCCATCTTTTATAACAAGTCagataaaaatcaacaaaagcaTTGAGTGATTGGATTTTTTAAAGGGAATTCCACCAGGCTTTCAAAATAACTGCTTAATTTGAGGTTTGATGTGAAACAATATTCCGttgttttaaatagatttaCCCAGAGTTAGTGATAATAGAATTTGATGATCTCAATGTCTTCTGCACCCATGTAAagcaaatacaaaaattaaGGTACAAA
>XM_022674081.1
GTCCGGCAGGGGGCGCTGAGCTCCGGCTTGATCTGTGCGAAGCGGACGGTTTCTCCTTGGACGGGAAatgggtcagagagagaggaggagagcggTTTGAATTAGTATAAACCTCAGTTTAGAGCGTTCACTCAGGATCAGGAGTGATTTATAAACCTGGCAGAGAGATCCGGAGCGGAACATGAAGCGCGATGTGCGGATCCTGCTGCTGGGGGAGCCCAAGGTGGGGAAGACCTCTCTCATCATGTCTCTGGTAGGAGAGGAGTTTCCTGACGTGGTTCCCCTGCGAGCTGAAGAGATCACCATACCTGCTGATGTCACGCCTGAGAAAGTGCCCACACATATAGTAGACTACTCTGAGACTGAGCAGTCTGATGAAGTGCTTAGACAAGAGATTGTTAAGGCTAATGTGGTTTGTGTGGTGTATGACGTAACGCAAGAGGAAACCATCGACAAGaTCAGGACTAAATGGATCCCGCTTGTGAACGGTGGTGCAGAAAAAGGCAGATTCCCATCATCCTTGTGGGCAACAAGTCCGACCTGCGCTCTGGCAGCTCCATGGAAACCATCCTGCCGATCATGAACCAGTTCTCTGAGATTGAGACCTGCGTGGAGTGCTCTGCTAAAAACCTGAAGAACATTTCTGAGCTGTTCTACTACGCACAGAAAGCTGTCCTGCACCCTACTGCACCTCTTTATGATCCTGAGGACAAACAGctGAAACCCCAGTGTGTTCGTGCCCTCAGTCGGATCTTCAGCATATCTGATCAAGACAACGATCGAATTCTCAGTGATGCTGAGCTCAATTACTTCCAGAAATCCTGTTTCGGGAACCCGTTAGCCCCTCAGGCTCTGGAGGATGTAAAAACAGTAGTGTGGAAAAACACCAGTGATGGAGTGCAGGACAACGGCCTGACGCTTAACGgttTCCTGTTTCTCAACACACTTTTTATCCAGAGAGGACGTCATGAGACTACGTGGACCATCCTTCGCAAGTTTGGTTATGACGATACACTTGAACTTACAGATGACTACCTCTATCCACAGTTACGAGTGCCTGTCGGTTGTACGACAGAGCTGAATCATCTCGGATATCAGTTCCTTCAGAGACTTTTCGAAAAGTATGATGAGGATAAagactctgctctctctccAGTGGAACTGAGGAATCTGTTTGGCGTGTTTCCCTACATGCCCTGGAGCGAGTCTGTGTACAGCAGTGTCCACACCACAGAGGAGACGTACATCTCTCAGCGAGGCTACCTCTGCCAGTGGACGTTGTCTGCGTACCTGGATATACACAGGTGTCTGGAATACCTGGGCTACCTGGGTTACCCCATTCTAATGGAGCAGGACTCTCAGACGTCTGCAGTTACAGtaacaAGAGAAAAAGCTGTAGATCTGGAAAAGGGGCAGACACAGcgctctgtgtttctctgcaaGGTGATTGGTCCCCGTGGGAAAGGAAAGACCGCCTTCCTACAAGCCTTCCTGGGCCGGAGTTTTGTGagtGACGAGCGCAATCCCAGTGCCTTCTCTCTCTACACCATAAACACTGTCACTGTTGCCAACCAGGAGAAGTATCTCATCCTGGAGGAAGTCGATGTGGAAACAGAGTTCCTGAAGGcggcggatgcagcgtgtgatGTTGCCTGTCTGATGTATGATGTCAGCGACCCAGACTCCTTTAACTACTGTGCTAGTATTTATAAGcagCACTACATGGATCGCGGGGTGCCGTGTGTGGTTGTAGGCTCCAAGATCGACCTGCCAGAAGTGAAGCAACACCACGGCATGAGCCCCGCTGAATTTTGCTACAAACACAGGCTCCCTGCTCCACTGTGCTTCTCCACAGTGCACACACAGAGCAACACGCACATCTACACCAAGCTGGCCTGGGCTGCTATGTATCCGCACCTGAATGGTTCAGACATGAGCAGCACTTCTTTCTGGCTTCGTGTGACTCTTGGGGCTGCAATCGCGACTGTGCTGGGCTTTGCCTTCTACAGAGCTTTCTTCAGacacaaataacacacacacacacacgctccagCGACATTCTTTGATCATCTCATTCTCTTCAGTTGTTGGCCCTCCCTctgttctttctctgtctgtctctctctatcacacacacacacacacacataaacacacagtctGTCTGCCTTATTGTGTCATTTAAGGACAGGCGTccccaggagacgtggaggtaAGCGTCAGAGTGGAAGCCCAGTCTCTGTGGCTGTGGTCACCAGGACGTGGGACAGCTCTGTACCGCTCCAGTGGGACAAATCCTGTTATATATCCTGATGTAGCTGCAAACTTCATGCTGGAGTAGAAAGCTGAGTTCATGATCACCATTTATGGTGGATGTTTGACCTGATGTTTTGCCAAATTGAGCTGCTTTGCTTAAGATGAGGCCTCCGCGCACCTGACAGTGTCAataatggagagaaagagagagaggtggagaatgtgtgtatgaaagagtgtatgagtgtgaatgagggagagctgctgctgctgcagttgtattgaattattttatttaggtaGACTCTTTTCCTGATTGCCAATTCAAGCAAGCTGTTTTTTGCATAATAATGATGACTGACAGCGAAGAAGACTTTccgttgtattttattttatttttttcccagaaaagCTGGTTTTGGACCATCTGCACTTATATTTACACCTTCATACAGTGATTTGGCCCCTTATGAGAGACCAAGCCATCTTTTATAACAAGTCagataaaaatcaacaaaagcaTTGAGTGATTGGATTTTTTAAAGGGAATTCCACCAGGCTTTCAAAATAACTGCTTAATTTGAGGTTTGATGTGAAACAATATTCCGttgttttaaatagatttaCCCAGAGTTAGTGATAATAGAATTTGATGATCTCAATGTCTTCTGCACCCATGTAAagcaaatacaaaaattaaGGTACAAA

Function

symbol description
rhot2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including mitochondrial outer membrane permeabilization; mitochondrion transport along microtubule; and regulation of mitochondrion organization. Located in mitochondrion. Is expressed in female organism; fin bud; midbrain; muscle; and somite. Orthologous to human RHOT2 (ras homolog family member T2).

NR:

description
mitochondrial Rho GTPase 2

GO:

id name namespace
GO:0097345 mitochondrial outer membrane permeabilization biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0047497 mitochondrion transport along microtubule biological_process
GO:0019725 cellular homeostasis biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07871 RHOT2, ARHT2; mitochondrial Rho GTPase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674079.1 True 2972 mRNA 0.48 19 1277785 1302779
XM_022674080.1 False 2970 mRNA 0.48 19 1277784 1302779
XM_022674081.1 False 2964 mRNA 0.48 19 1277789 1302779

Neighbor

gene id symbol gene type direction distance location
wdr90 wdr90,LOC107677127 coding upstream 6282 1224176 ~ 1271502 (+)
nlrc3 nlrc3 coding upstream 68387 1020134 ~ 1209397 (+)
LOC111193408 NA coding upstream 329199 943873 ~ 948585 (+)
cog7 cog7,LOC107717425,LOC107747870 coding upstream 413196 840868 ~ 864588 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding upstream 482241 777829 ~ 795543 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding downstream 19335 1322114 ~ 1415632 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding downstream 137050 1439829 ~ 1455488 (+)
LOC103029750 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC101073377,LOC103395674,LOC101167724 coding downstream 179907 1482686 ~ 1486444 (+)
c11h7orf50 cunh7orf50 coding downstream 195332 1498111 ~ 1515737 (+)
colec10 NA coding downstream 584822 1887601 ~ 1905908 (+)
G96132 NA non-coding upstream 441682 835482 ~ 836102 (+)
G96124 NA non-coding upstream 468254 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 534045 736741 ~ 743739 (+)
G96073 NA non-coding upstream 691672 585905 ~ 586112 (+)
G96061 NA non-coding upstream 698953 578494 ~ 578831 (+)
G96281 NA non-coding downstream 38782 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 41258 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 62005 1364784 ~ 1456887 (+)
G96273 NA non-coding downstream 79646 1382425 ~ 1421881 (+)
G96289 NA non-coding downstream 89229 1392008 ~ 1392358 (+)
LOC103040575 ube2i,LOC107677193 other upstream 469210 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2086272 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2562211 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 3662691 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4504789 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4977543 6280322 ~ 6382717 (+)

Expression


Co-expression Network