LOC103036307 (LOC106588695)


Basic Information

Item Value
gene id LOC103036307
gene name LOC106588695
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2151917 ~ 2167691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674108.1
ATAGAGTTTAAAAATCCCACACATGCGCACAACACGCTTCGGAATCCCACcgtctcacatacacactcacttaaacacacacgcaGCCATATTGGAACGCTAACGGCACGGACCCGTTGAGCAGCGCAGTGATCCGCTAGCAGAGCTCGGCTAGCGGCTAGGTGGGATTGTGAGCCCTGCTCCTGCTGGGCGATTTTTAACCTGTCCGCGGTTCCGTAAAGCCCCCGGGGCTTCGGTTTTTAACCCGTCCAGGAGAGCGGAGCGGGGCGgttctgctgtgtgtgagagtgagtgagtgagtgagtgtgttgtggatcCATTCGCTTGGATGGACCCGAGGCTCGCCTGGATCCAGCCCGAGCAGAAAGGACCCGCTAACGCTTTGTGGATGCGTGTGTGGGAAACCTCGCAGGGCATGCGGACCGGTAGCGGCACCGGGACGAACCGGGCCGGGTCGCCCACCATGGCGTCCGGTTTGCCGAAAGCCAGCCTTGCCGTGGTCCCGCCGGTAACGTTACCGGGCTTCGCCggccaccaccatcaccaccacctctCTAACGGCAGCGCCGTCTCTTCCAGCTTCTGCCCGCCAGTGGAGAACCCTGCAGCCGGCGAGAGGAAAGCGCCCCAGAAGGACGGTTCTGTGTCCCCGGCCGAGTCCGCGGACTCGGAGACGGACAGTCCCAGGTCGGACTCCTTAGGAACTTGGGCCAAACTTCATTTTAACTTCGCCGAGCATTTACACAACATTAACAACCACTTACGCCACCGCcgcctccagcagcagcagcagcagcagcagctccactccCACACTCTCCCACCACACTTTCACCGGCACTTTCCCTCACCAGACCTCCAGCAGAACCTCCAGCAGGCCAGGAAGAAAGGTGACAACAAGGCGAGCACCTACGGCTTCAACTATCTGCTCTCCCATTCCAAcactaaccacttctgttcagGAACGCCGTGGAAGAAGAGGAGATACGGCCCTGGCGTTAACGGGTTACATGAAGAGATAGTGGACTTCTACGATTTCATGTCTCCACGGCCGCAGGAAGAGGCCATGAGGAGAGATGTGGTCAACCGTATTGAGACTGTGATCAAAAACCTGTGGCCTACAGCTAATgtccaaATATTTGGCAGCTTCAGTTATGGACTGTACCTCCCAACAAGTGACATTGACCTGGTGGTGTTTGGGAAGTGGGAGCGACCACCTCTTCAGCAGCTTGATCAGGCCCTAAGGCAGCAGAACTTGGCAGAGCCTTTCTCAATCAAAATTCTGGATAAAGCTACAGTTCCTATTATAAAACTGactgacagagaaacagaggtgAAAGTtgacatcagctttaatgtgGAGACTGGGGTCAAAGCTGCTCGCTTTATTAAAGACCACTTGAagAAATACTCTGTGCTGCCATATCTGATCTTTGTTTTGAAGCAATTCCTGCTGCAGAGAGATCTAAATGAAGTGTTTACTGGAGGCATCAGTTCCTACTGCCTCATTTTAATGGCCATCAGCTTCTTACAGCTCCACCCTAGAATCGACTGCAGGGGCACTAATATCAATCTGGGCATTTTGCTCATTGAGTTTTTTGAGTTGTACGGGAGGAATTTTAACTACTTGAAAACGGGCATCCGTGTGAAGAATGGAGGGGCATACCTGGCCAAAGAAGAGATTTCTAAAGGCATGACCAATGGACACAGACCCTCAATGCTGTGTATTGAGGACCCAAACCTACCAGGTAACGATGTGGGTCGCAGCTCCTACGGTGCCATGCATGTCAAGCAGGTATTCGACTACGCTTACATCGTCCTCAGTCACGCTGTCTCTCCTCTGGCTCGCTCCTATCCCAACAAAGAAATGGACAGCACGCTAGGGCGGATACTCCGACTGACCCAGGAGGTGATTGACTACAGGGAGTGGATCATGCAGAAGTGGGGAGACCGACACAACGCCAGGATAAACCGCTGTCTTGTACAGTTTGAAGCTGATCCTGAGGAGCAACAGAGAGACTCCTCATCTCCTCAGAGCGCCGATTCAATCATGTCTCTGTCCAGCCCTCAACAGCACTCTTCCTCCtcgtcttcctcctcctcctcctcctccgttTCATCCCTTTCAGGAAGTGACATTgACTCTGACTCAGTCCCCTGTGGAATCAAGCAGCTTCAAGCTTCCCAGACATCCACCCTGCCTAGCACCCAGCCGAGGCCACAGGGCAGGACGAATCCATCTGACATGGTTTCATCCGCCAAGGGACAGCTGCGAAAACTACTTCCTGAGACCATGGTGGTGCCGCCACCATTGCCAAGCAGGCCAGCGTGCATGGATGGGTGTGTCCCCTTTAGCGCCAGCTACTGGCTGCCCCCCACCGTGGCCTCTCCTGTCTACCTCAGCCCCCTTCCGGGCTCCCACCACCAGCACTACGCCAAGTTTAATAATGGTCAAAGGTTTGTACTGAAGGGGCCACCCCACAACGGTGGCTTCGAGCCTAGTGTGATGCCCGGACCCCGACCTCACCCTCCGCAGCACAATCGCAACAGCTGGCGCCGCCGCAGGAGGGACACGGCGCCCTCCAGCCTCAACAGATAGAAACGGCTCACCTGCCACAAGTCAAAGGTAGCACTTCCTTTCTAAGTGGCCGCTGACGATGACGTCTCCCACTCTCTGACTTGGGTGGTCTCAGCCGATGGCTTCAGGTCACAACGTGCTCGTCTCCATGTTGTGACTGACTGCCTGCCTGTTTGATGTATTTGTTCTTCATATTCACtcttcacctttttttttggtcctcctccaccctttttttttgtgttgtctgGTGGCCGTAGCCTTTTAAGTTTACTAAAGTTAAGTTTGGGTTTCTGTTTGTGGCGCACACTAAACTTTTTGACACAGCCAGGCTGTACTTGGAATTATATTTAGTATAACTCTTGTGCAatatgggtgtttttttttttttgtttgtttgtttgtgtttttttatttgagttttttagttatgtttttaatttaatgttttgtcaaagtttacatttttttgtgtttctgtgatGAATGTAAGCTCTTGTAAGACTGTGGTGAGGTTTAACTGATGTTATGTACGTAGTGTTTTAtcatgttctaatccatactGTGAACCTGTCTGGACGGTGGTTGTGGTTTTGTGCATGATAAAACTTTATGTACGCACCAAATTCCAGGAGACGTCCTCCCTGCACGCCAGCCTGCCACGCACCAGCAGGTGGAGCCATTGTTAAACTACTTTGTGCCAAAATCTTATGGGTACTGCAACCGGAGGCCTGGTAGACAAAGTGTTCCTTATGTTAAAGCCTATGTCTTCTCACAGCCTGCAATGTACCAAACcgcttcttgttttttttctcttcattttatctttttatttgttttgtatctGTACTTGATTTATGTTGACCTGGCCTGACTTTTGACTCCTCCATTCTCAAGGCATCCTTCTTTGCACCCAGCTGTTCAGTTGAGTCAGGGAAATGATGAATGATTTTGGGGTTAATGGAAAGATCTTGCCGCTGCCTTGTGCCAGTTTTACTTTGTTGTCTGTTGTATTGAGACTTGAGGAAATATTTAGTTtcttattctaattttttttaaacaagggaTCTTTCGATAAAGGGTTTGCTTCTTGCTCGTCAAGAGGCAAAACAATTTGTGATTCCGTTATGGAATCTGTCTGCTTCTTGTTCTATCAAGAGCAACCCCcatttcctttatttaaatattgttttcccTACAGTTACAAACCTTTTCTGGGTAGAAACTGCCAAAACGGTGACTTGCAGGTTTATTACAACTACTGTAAATCTCTCCACATAAAATTCCTCTAAATGACCATGCTTGGTTGATGGCGCAGCTTGTGTGAGTGCCAAATATTTGAAACACATTAGTCTACTTCCAAACTACTGACCAGTTACTTCCAGTGTCATGCAGTGTTTCTACCAGTATTCTatgcaaaatgtattttgtttttggtcTTTTATTTgcttacacacattatcagtgTTTATCAAAACTCATGCCACTATATTTAGTAAGAATTCTGGTACGGGATTGTGAAAGTGATTTTTAGCTAAATGGCGGGACATGTACTGTTCacctttccttttccttttcttttttttataaaagaaatTAACTGTCCTGCCAGATATTCCACAAAGCactccattattattattttattattattattattattattattattattattattattaagtgtttGTCCCAAAGACAGTCTTATTCAGATCTAGAACACACTTGCAGCCATGTATTATATCTCAAGCAACCCAGAAGTGACTTCCTGTTCCACCTGGGTACATGAGGGTTTTGCCAAAAGGAAAATCCTGCTTTGCACTCCATGGACTTGGGAAGGAGAGAAACAATGGACTGCTTCATGTGCTCAGTTGTATatctttacttcagcagtgctccCAGTGAAAGAGTCCACATGGGCCAAAATGTGTCATCTGCTCAAAGGTGATATTTGAATGTAACCTGAAGTTAATAAGGTTTTTGGGGGttgttttttgccttttttgtccctggatatttttatgtaaaattttctacagatta

Function

NR:

description
PREDICTED: non-canonical poly(A) RNA polymerase PAPD7-like isoform X1

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674108.1 True 4624 mRNA 0.48 13 2151917 2167691

Neighbor

gene id symbol gene type direction distance location
ice1 NA coding upstream 3179 2126283 ~ 2148738 (+)
prpf3 prpf3 coding upstream 30207 2110877 ~ 2121710 (+)
LOC103032920 NA coding upstream 66519 2074608 ~ 2085398 (+)
nov NA coding upstream 196851 1950534 ~ 1955066 (+)
mal2 mal2,LOC107683116,LOC107757438 coding upstream 227766 1911105 ~ 1924151 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding downstream 74479 2242170 ~ 2495068 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding downstream 568438 2736129 ~ 3006374 (+)
cobl NA coding downstream 979678 3147369 ~ 3272603 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding downstream 1116336 3284027 ~ 3372686 (+)
LOC103035455 LOC103035455,LOC108429251 coding downstream 1486109 3653800 ~ 3741264 (+)
G96541 NA non-coding upstream 75963 2075386 ~ 2075954 (+)
G96520 taf2 non-coding upstream 137630 2011391 ~ 2014287 (+)
G96517 taf2,LOC106594256 non-coding upstream 148306 1997871 ~ 2003611 (+)
G96460 NA non-coding upstream 294022 1810389 ~ 1857895 (+)
G96291 NA non-coding upstream 722700 1426258 ~ 1429217 (+)
LOC111193411 NA non-coding downstream 56891 2224582 ~ 2227412 (+)
G96582 NA non-coding downstream 94348 2262039 ~ 2265095 (+)
G96601 NA non-coding downstream 286061 2453752 ~ 2454050 (+)
G96604 NA non-coding downstream 327678 2495369 ~ 2495929 (+)
G96609 NA non-coding downstream 333466 2501157 ~ 2503293 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1343343 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1221360 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1697299 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 2797779 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3639877 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4112631 6280322 ~ 6382717 (+)

Expression


Co-expression Network