LOC111193433 (s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143)


Basic Information

Item Value
gene id LOC111193433
gene name s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6558865 ~ 6563536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674220.1
CGGTGCCTGAGTATATAAATCTCCCTTCAAACATTCGCACTTTTTTCCTGCAGGACAGAAATCTCTGCTCTACCAGTTCCTCCCCGTCGTCTAAACCGTGAGCCACCATGCCGACTGACCTGGAGAGATCTATGGAATCCCTGATCACGGTTTTCCACCGTTACGCCGATAAAGAAGGCAACAGCAACACACTGAGCCGCAGGGAACTCAGACAGCTCATCGAGTCCGAGCTCCCCACCTTCCTTAAGtCTCAGAAAGACCCCGCCACAGTGGATAAGATCATGAAGGATCTGGACGCTAATGGAGACGGAGAGGTCAGCTTTGAGGAGTTTGTGTCTCTGGTGGTCGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGCTGCACAAGAAAGGAAAGAAGTGAAAGAAATGCACGGAGGaaacaagagaaagaggagaggaggaaagaTGTTGAATTTTCtactaaatcattttataaaTGAGTTTTAATAAACATGACTGCGAACAACAA
>XM_022674221.1
atgaagaacaagaagaagtaCAAAGTGGATCAGACGGGACTAATAACACACATATCCAATGTGAGCCACCATGCCGACTGACCTGGAGAGATCTATGGAATCCCTGATCACGGTTTTCCACCGTTACGCCGATAAAGAAGGCAACAGCAACACACTGAGCCGCAGGGAACTCAGACAGCTCATCGAGTCCGAGCTCCCCACCTTCCTTAAGtCTCAGAAAGACCCCGCCACAGTGGATAAGATCATGAAGGATCTGGACGCTAATGGAGACGGAGAGGTCAGCTTTGAGGAGTTTGTGTCTCTGGTGGTCGGCCTGTCCATCGCCTGTGAACAGTGCTACCAGCTGCACAAGAAAGGAAAGAAGTGAAAGAAATGCACGGAGGaaacaagagaaagaggagaggaggaaagaTGTTGAATTTTCtactaaatcattttataaaTGAGTTTTAATAAACATGACTGCGAACAACAA

Function

NR:

description
PREDICTED: protein S100-A1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674220.1 True 512 mRNA 0.48 3 6558865 6563536
XM_022674221.1 False 475 mRNA 0.47 3 6560421 6563536

Neighbor

gene id symbol gene type direction distance location
krtcap2 krtcap2 coding upstream 5584 6548755 ~ 6553281 (+)
slc50a1 slc50a1,LOC106574309,LOC106606111,LOC107582072 coding upstream 63877 6486709 ~ 6494988 (+)
LOC103021450 efna1b,LOC108429932,LOC107595011,LOC107714705,LOC107699555,LOC108269829,LOC107582071,LOC106598406 coding upstream 75158 6456511 ~ 6483707 (+)
flad1 flad1,LOC100286671 coding upstream 429264 6117809 ~ 6129601 (+)
chrnb2 chrnb2,chrnb2b,LOC107594892,LOC107673697,LOC107714697,LOC107677024,LOC107582065 coding upstream 574623 5946355 ~ 5984242 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding downstream 41968 6605504 ~ 6607954 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding downstream 48182 6611718 ~ 6631736 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding downstream 148885 6712421 ~ 6823042 (+)
rab13 rab13,LOC107723501,LOC107714709 coding downstream 289247 6852783 ~ 6860824 (+)
fam189b fam189b coding downstream 298062 6861598 ~ 6879371 (+)
G97674 NA non-coding upstream 37950 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 94645 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 399945 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 414983 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 494064 6063761 ~ 6064801 (+)
G97882 NA non-coding downstream 191205 6754741 ~ 6756061 (+)
G97883 NA non-coding downstream 193180 6756716 ~ 6757072 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding downstream 210742 6774278 ~ 6850763 (+)
G97896 NA non-coding downstream 247985 6811521 ~ 6812360 (+)
G97870 NA non-coding downstream 261382 6824918 ~ 6827579 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 176148 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 708335 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1577918 4965470 ~ 4980947 (+)
LOC111193421 mboat1 other upstream 2659946 3864990 ~ 3898919 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 3120139 3389051 ~ 3438726 (+)
adar adar,LOC107723500 other downstream 90814 6654350 ~ 6681691 (+)
apoc1 NA other downstream 498596 7062132 ~ 7066029 (+)
G97926 NA other downstream 505152 7068688 ~ 7070129 (+)
G97931 NA other downstream 564268 7127804 ~ 7130809 (+)
G98636 NA other downstream 2748870 9312406 ~ 9312803 (+)

Expression


Co-expression Network