LOC103021742 (kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686)


Basic Information

Item Value
gene id LOC103021742
gene name kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6712421 ~ 6823042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674225.1
agagagagagagagggagctgaGGAGTCTGGGGAGGAAAAGCAGTGAAAATGAAGGCGCTGgtggtgttttctgtgtttattctcTCCGTTTGCTTTGGCTTGTTTTGACCGGGAGTTTGGATCTGGATGAGCGGCGCGAGCCCTCTCTGATGAGCGTGCGGGTTATGTAGCCCTCAGCATCCCTCCAGCCTCGGTCTGTGTGgaggtttatttctttattttctattttttaccttttttattttgtttttatgggTGGTTTTCTGCAGAAAAAGGCGTGAGGTGGATCCCTGAGTTCAAGAAGGGATTTTTTTAGGGGAGAAAAGCGGGATTTTATTGAAGCGCTGAGGAGGAGACAGGTTGCTGCTCCCTCTGATCTGATAGAGAGACGCCTCTCAGCTGATGGAGGAGACGCGCGAGCAGAGCGAGGATGGACTGATCGTGACaacatgaaaaagaaaaagtgtggaGGATTAAGGTGTCCCTGCCGTCGAGTGCACGCCTGAACCCGGGGAGAGATCCAGCCAGACAGCAGGAGAGAGGAGAGtccaggaggaggaggaggaggaggaagacgaGGAGAACACGCCCAAAACTGCTGGAGTTTCCTGGTTGCCATGGATCCCCCTCCCTCCTTGAGTTTGTCCCTTCTTGCAGGGAGCGAGGAAGAAGATCAGCGCCCTCCACTCCCTCTGAGTGGCATCTCCCATGCTTCCTCGCTCGCCGGCACGTACCCCGGCAACAACCACTCCAACCACACCGGCGGGACCAGCAGCCTGGAGCGCCTCAACGGGACCCCGTCGCCCAGCGGCCCGAGCCTCCCGCCGGCGTCCCTGCCCAAGCTGCCACTGGCCACAACACCCCAGCTGCCCACGCCTATCCCTAACGCCTTGCACCCCACCAGCACCCCGCTGTCCTCTTGCCTGGGCAGCCAGCACAGCTTGAGTGGGGAGGCGCCACCCATCTATAACGCCCTCTTCTACTCCTCACATTCCCCTTCATCCGATCGAGAGCGAGATAGGGACCGGGAAAGGGACAGGGGCTGCAAGCACAGGCAGGCTAGTCCCTTGGTTCACCGGCGAGACAGTAACCCCTTCACGGAGATTGCCATGAGCTCGTGCAAGTACAGCGGCGGCGTGATGAAGCCGCTCAGTCGCCTCAGCGCCTCGCGGCGGAACCTCATCGAGTCAGACAGCGGAAGTGACACCAAAGAGGGCGGGAGCGGGGCTGTAGGCGGGCAGGGGGCAGGGCCACCGCCGCCACCGCCTTCCTCGTCCTCCTCCCTACAGCACCACAGTCAGACCCCGCAGCAGCAGCCGCAGCAGAACCCACCGGAAATCGTCATTTCCTCTAAAGAGGACCCTCCCTACGGACACGTCTACGAGCTGGagccatcagccaatcagatgtcCATATACCATCAGAACCACACGCTCTCCGAAAGCAGGGCCACACTTGGGATGGCCGGGGGCGGAAGCAATGGGcggcgagggggcggggctggcACCGGGAGGACAGCCTTGAAGGCCCCAAAACGCAAGAACCAGAACATTGGCTACAAACTCGGCCATCGTAGGGCGCTGTTTGAGAAGAGGAAGAGACTTAGCGACTACGCGCTCATCTTCGGCATGTTCGGCATCGTGGTAATGGTGATTGAGACGGAGCTGTCCTGGGGCGTCTATAGTAAGAGCTCCATGTACTCTCTGGCGCTGAAGTGTCTTATCAGCCTCTCCACCATCATCCTCCTCGGCCTCATCATTGCTTACCATGCTCGAGAGGTGCAGctcTTCGTCATCGACAACGGGGCGGACGACTGGCGCATCGCCATGACGATGGAGCGGGTGCTGCTCATCgctctggagctgctggtgtcGGCGGTGCACCCGGTGCCGGGCGACTTCAAGTTCGTGTGGCGAGCGCGCCTGGCCTTCACCTACATCCCCTCGCAGGCGGAGGCAGACCTGGACATGGTGCTGTCTGTGCCCATGTTCCTCCGACTCTACCTCATCGCCCGCGTCATGCTCCTCCACAGCAAGCTCTTCACCGACGCCTCCTCACGGAGCATAGGGGCCCTCAACAAGGTGCACTTTAACACACGGTTTGTGATGAAGACCCTGATGACCATCTGCCCGGGTACAGTGCTGCTGGTCTTCAGCATCTCCCTGTGGATCATCGCGGCCTGGACCGTACGAGTGTGcgagaggtacCATGATGCTCAGGACGTGACCAGCAACTTCCTGGGAGCCATGTGGCTCATCTCCATCACCTTCCTCTCCATAGGCTATGGAGACATGGTACCTCACACCTACTGTGGCAAAGGAGTGTGTCTGCTGACCGGCATCATGGGCGCAGGCTGCACAGCATTGGTCGTTGCTGTGGTAGCAAGGAAGCTGGAGCTGACCAAGGCCGAGAAGCATGTGCACAACTTCATGATGGATACACAGCTCACCAAACGGATAAAAAATGCGGCGGCCAACGTTCTCCGGGAGACCTGGCTCATCTACAAACACACGAAGCTGATGAAGAAAATTGACCACTCCCGCGTCCGCAAGCACCAGAGGAAGTTCCTGCAAGCCATCCACCAgCTGCGAAGTGTAAAAATGGAGCAGAGAAAGCTCAGTGACCAGGCCAACACACTGGTGGACCTTTCCAAGATGCAGAGTGTGATGTACGAGCTGATGTCGGAGCTGAACGACCGCAGCGAGGACCTGGAGCGGCAGATGTTGAGTCTGGAGCAGAGGGTGGAGCAGCTGACGGCCGGGTTCAGCGCTCTGCCCGCCCACCTGACGGCCACGCTCAGCGCTCAGCACGCCGCACTCGTCCACCTGCTGCAGGAGCGAGACGCCAAGGCCCTGAGTCCGGTCACGCCCACTGCCCTCCTCACACCTGCCCCTGCCCCCGTCCCACCCACAACTGTCCCCACAACAGCCTCTAAAGAGGACAACCCCAACACCAGCACCTCCAGCTGCTGAGAGAGGGGCGGAGCCTCAGCCAAGCTGGGGAGAAATGCATGGGTGTTATGGTGAGGAACCTggctgaaaaagagaaagagaaagagagagagagagaaagagagaggggtggggtcTCGGACTTGGCCAAGGCaaactgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagagggaggtggAGCCTCAGCCAAGCTGGGGAGAAATGCATGGGTGTTATGGTGAGGAACCTggctgaaaaagagagagaaagagaga
>XM_022674226.1
gagagagagagagagggagctgaGGAGTCTGGGGAGGAAAAGCAGTGAAAATGAAGGCGCTGgtggtgttttctgtgtttattctcTCCGTTTGCTTTGGCTTGTTTTGACCGGGAGTTTGGATCTGGATGAGCGGCGCGAGCCCTCTCTGATGAGCGTGCGGGTTATGTAGCCCTCAGCATCCCTCCAGCCTCGGTCTGTGTGgaggtttatttctttattttctattttttaccttttttattttgtttttatgggTGGTTTTCTGCAGAAAAAGGCGTGAGGTGGATCCCTGAGTTCAAGAAGGGATTTTTTTAGGGGAGAAAAGCGGGATTTTATTGAAGCGCTGAGGAGGAGACAGGTTGCTGCTCCCTCTGATCTGATAGAGAGACGCCTCTCAGCTGATGGAGGAGACGCGCGAGCAGAGCGAGGATGGACTGATCGTGACaacatgaaaaagaaaaagtgtggaGGATTAAGGTGTCCCTGCCGTCGAGTGCACGCCTGAACCCGGGGAGAGATCCAGCCAGACAGCAGGAGAGAGGAGAGtccaggaggaggaggaggaggaggaagacgaGGAGAACACGCCCAAAACTGCTGGAGTTTCCTGGTTGCCATGGATCCCCCTCCCTCCTTGAGTTTGTCCCTTCTTGCAGGGAGCGAGGAAGAAGATCAGCGCCCTCCACTCCCTCTGAGTGGCATCTCCCATGCTTCCTCGCTCGCCGGCACGTACCCCGGCAACAACCACTCCAACCACACCGGCGGGACCAGCAGCCTGGAGCGCCTCAACGGGACCCCGTCGCCCAGCGGCCCGAGCCTCCCGCCGGCGTCCCTGCCCAAGCTGCCACTGGCCACAACACCCCAGCTGCCCACGCCTATCCCTAACGCCTTGCACCCCACCAGCACCCCGCTGTCCTCTTGCCTGGGCAGCCAGCACAGCTTGAGTGGGGAGGCGCCACCCATCTATAACGCCCTCTTCTACTCCTCACATTCCCCTTCATCCGATCGAGAGCGAGATAGGGACCGGGAAAGGGACAGGGGCTGCAAGCACAGGCAGGCTAGTCCCTTGGTTCACCGGCGAGACAGTAACCCCTTCACGGAGATTGCCATGAGCTCGTGCAAGTACAGCGGCGGCGTGATGAAGCCGCTCAGTCGCCTCAGCGCCTCGCGGCGGAACCTCATCGAGTCAGACAGCGGAAGTGACACCAAAGAGGGCGGGAGCGGGGCTGTAGGCGGGCAGGGGGCAGGGCCACCGCCGCCACCGCCTTCCTCGTCCTCCTCCCTACAGCACCACAGTCAGACCCCGCAGCAGCAGCCGCAGCAGAACCCACCGGAAATCGTCATTTCCTCTAAAGAGGACCCTCCCTACGGACACGTCTACGAGCTGGagccatcagccaatcagatgtcCATATACCATCAGAACCACACGCTCTCCGAAAGCAGGGCCACACTTGGGATGGCCGGGGGCGGAAGCAATGGGcggcgagggggcggggctggcACCGGGAGGACAGCCTTGAAGGCCCCAAAACGCAAGAACCAGAACATTGGCTACAAACTCGGCCATCGTAGGGCGCTGTTTGAGAAGAGGAAGAGACTTAGCGACTACGCGCTCATCTTCGGCATGTTCGGCATCGTGGTAATGGTGATTGAGACGGAGCTGTCCTGGGGCGTCTATAGTAAGAGCTCCATGTACTCTCTGGCGCTGAAGTGTCTTATCAGCCTCTCCACCATCATCCTCCTCGGCCTCATCATTGCTTACCATGCTCGAGAGGTGCAGctcTTCGTCATCGACAACGGGGCGGACGACTGGCGCATCGCCATGACGATGGAGCGGGTGCTGCTCATCgctctggagctgctggtgtcGGCGGTGCACCCGGTGCCGGGCGACTTCAAGTTCGTGTGGCGAGCGCGCCTGGCCTTCACCTACATCCCCTCGCAGGCGGAGGCAGACCTGGACATGGTGCTGTCTGTGCCCATGTTCCTCCGACTCTACCTCATCGCCCGCGTCATGCTCCTCCACAGCAAGCTCTTCACCGACGCCTCCTCACGGAGCATAGGGGCCCTCAACAAGGTGCACTTTAACACACGGTTTGTGATGAAGACCCTGATGACCATCTGCCCGGGTACAGTGCTGCTGGTCTTCAGCATCTCCCTGTGGATCATCGCGGCCTGGACCGTACGAGTGTGcgagaggtacCATGATGCTCAGGACGTGACCAGCAACTTCCTGGGAGCCATGTGGCTCATCTCCATCACCTTCCTCTCCATAGGCTATGGAGACATGGTACCTCACACCTACTGTGGCAAAGGAGTGTGTCTGCTGACCGGCATCATGGGCGCAGGCTGCACAGCATTGGTCGTTGCTGTGGTAGCAAGGAAGCTGGAGCTGACCAAGGCCGAGAAGCATGTGCACAACTTCATGATGGATACACAGCTCACCAAACGGATAAAAAATGCGGCGGCCAACGTTCTCCGGGAGACCTGGCTCATCTACAAACACACGAAGCTGATGAAGAAAATTGACCACTCCCGCGTCCGCAAGCACCAGAGGAAGTTCCTGCAAGCCATCCACCAGCTGCGAagtgtaaaattttaaaaaatgtacattttt

Function

symbol description
kcnn3 Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in paranoid schizophrenia and schizophrenia. Orthologous to human KCNN3 (potassium calcium-activated channel subfamily N member 3).

NR:

description
PREDICTED: small conductance calcium-activated potassium channel protein 3

GO: NA

KEGG:

id description
K04944 KCNN3, KCA2.3; potassium intermediate/small conductance calcium-activated channel subfamily N member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674225.1 True 3256 mRNA 0.58 10 6712422 6823042
XM_022674226.1 False 2623 mRNA 0.58 9 6712421 6817568

Neighbor

gene id symbol gene type direction distance location
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding upstream 80685 6611718 ~ 6631736 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding upstream 104467 6605504 ~ 6607954 (+)
LOC103022085 NA coding upstream 138671 6558877 ~ 6573750 (+)
LOC111193433 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143 coding upstream 148885 6558865 ~ 6563536 (+)
krtcap2 krtcap2 coding upstream 159140 6548755 ~ 6553281 (+)
rab13 rab13,LOC107723501,LOC107714709 coding downstream 29741 6852783 ~ 6860824 (+)
fam189b fam189b coding downstream 38556 6861598 ~ 6879371 (+)
nbn NA coding downstream 62527 6885569 ~ 6905841 (+)
gtpbp10 gtpbp10 coding downstream 112497 6935539 ~ 6951926 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding downstream 203251 7026293 ~ 7036746 (+)
G97674 NA non-coding upstream 191506 6508111 ~ 6520915 (+)
G97672 NA non-coding upstream 248201 6462566 ~ 6464220 (+)
G97639 NA non-coding upstream 553501 6154825 ~ 6158920 (+)
G97637 NA non-coding upstream 568539 6141717 ~ 6143882 (+)
G97624 NA non-coding upstream 647620 6063761 ~ 6064801 (+)
G97870 NA non-coding downstream 1876 6824918 ~ 6827579 (+)
G97901 NA non-coding downstream 60201 6883243 ~ 6884575 (+)
G97930 NA non-coding downstream 294568 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 296781 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 396190 7219232 ~ 7219527 (+)
adar adar,LOC107723500 other upstream 30730 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 147418 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 329704 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 861891 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1731474 4965470 ~ 4980947 (+)
apoc1 NA other downstream 239090 7062132 ~ 7066029 (+)
G97926 NA other downstream 245646 7068688 ~ 7070129 (+)
G97931 NA other downstream 304762 7127804 ~ 7130809 (+)
G98636 NA other downstream 2489364 9312406 ~ 9312803 (+)
G98840 NA other downstream 3173162 9996204 ~ 10002046 (+)

Expression


Co-expression Network