nbn


Basic Information

Item Value
gene id nbn
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 6885569 ~ 6905841 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674234.1
AGCGTCATTGGGTGTACAGGAAGGCGTGCAGCCTGCGGCGCGAGTATGcaggaatataataataataattaaatagatATTAAAGCCTGTTTAGTTTAGGGCTCCGTGTGTCAGTTGGTTGGTTATAATGGTGGGGTTTTAATCTGTATTAATCCGTGTTGAGCGGCTGAGAAGCGGCGGAATGTGGATCCTTCAGCCTGCAGAATCAGAGCCAGGGACGTTCTACTTACTCCCTGGTAAAGAGTATGTAGTGGGTCGGAAGAACTGTGACATCCTCCTGGCCAATGACCAGTCCATCAGCCGTGTCCACGCCCAGCTTACAGTCGCTGACCAGACGGTCACGCTAAAGGACAGCTCTAAATATGGCACTTTTGTTAATGATGAGCAGCTCACGACCAACTCCACCAAGACTGTGCATGATGGTGACCGCCTCACTTTTGGGGTCTTCCAGAGCAAGTTCAGACTGAAGCTGAACTCTATGGTGGTCTGTTCATCCTGTGTTGATAATGAGGGGAAGGCTGCGCTCTCCAAGGCTGTGCAGTCTGTCGGGGGAAGACTGGTCAACTCCTGGTCACCAGACTGCACTCACCTtgtcatgcccactgtgaaggTCACCATTAAGACGATCTGTGCCCTGCTGTGCTGTCGACCCATAGTGAAAGCAGAGTTCTTCACTGAGCTCTCTCGAGCTGTGCAGCGCAAAGAAAAAGTCCTCCCTGCAGCCCAGAACTTTAAGCCGGAGATTGATGAGCCCAGTCTGACTAAGCAGGACGTGGATCTGGGTCCTCGGCCTGAGAGAAAGTCTCTCTTCAGGGACAAAACCTTTGTCTTCCTCAACGTCAAACAGatGAAACGTTTAAGTCAGGCCATCACTTGTGGAGGTGGGGTGACCCAGCTGTTAGAGGAGGGGTCTCTGCCTCTGCCGCTGCTGCAGTCCACTGGAACTTGTGTTATTGATGTGGGAGCAGGAGCTTCACAAGCACTCGTACCTCCTGCCACCAAGAAATGGGTGGACTCTGTGGGCCAGGTTTTACACAGAAATGGTCTACGCTTCATCGCAGAGTCTGAGATTGGATTGGCTGCCATCTATGTCAGTAATCAGACCTACTGTAATCCCTGTGCCTCTCCGGACTCTGaGTCTGTAAGAGCAAGGCCAGCCATTGCTGCATCAACCCTTTCCCAGAATGCAACAGTGGATGAGACTGTACTAGCTGGAGCCTCGCAGAACATCACAGCATATGTGGTCAACACTGAACCCTCTCAGGGTCTAGACAGGATGGATGTAGGTGGGCCCACAGCTGTGGGAGAGACCCCAGAGAAACGCTCTGAACAGGCAAAGCCACTGAGGGCAACACGTCCGCCATCAACCTCATTCAGAAAACCGCCACCAACCATGCAGCCTCCGGCCCCCCGCTCCCCTCCAGAGCCTAAATCATCACTGAGCTCCACTGAGGAGGTGAAGGAGAAGACGAAGGGAGAATCAGCACCTCCTGAGAGACTCTCAGCCCCTCTGAAAAACTCCAGCTCCTCCCTTAAAAAATCCCCCCAGAAACAGTCGTCCCTCACAAGCTTCTTCCAGCCTGCCAGCAAAAAGAGGCCACGTGAAGGCAGTGCAGATTCCCAGCTTTCTGAAGCGAAGCTCTCCAGAcgagaggaggaggacgaggagaACCAGAAGAAGCAAAGTTCGTCCACCAGCCGGACTCCTATAAACTCACAAACAGGCCAAAAGCTCCAGAGTGGCTCCAGCCAGCGCTCTGATTTCAGTGCCAGTCTGGGTTTGGGCTTTGGACTCGGCAGTGGTGACCCTGTTCCCGATCAGAACTTAGATTCCAGTCTTCTCTCGAACAGTAAGAAGAGGAAGGAACCAGTGAAAGACTCTGTGGAGCCTGCGGACAATTTAGATTTAGATGTTTCACTAGAGGAGCTCGAGTCCATCATGTCTGAGGACATGGACGAACCCGTGCAGGCGGTGGCCAGTAAGAAACAGCGTTTGGATCGAGGAGAGAGCAGCACAGCCAGTAAACGAGAGGACACTTCATCCAGCAACCAGAAAAAGCTAAGTCTAGACAGGAGGAGTCAGAACCTGGAGCATCGGGACTCTGAGAAGAAGCTACAGGAATCCAGGAGAATGACTGATTTGGAGAAGGATGAGGGACGTTCAGTGCAGAAGAAGGATAGATATGAGTCTGAAGATGTTAAAGATGAGGAAGTGTCCTTTGTTGTGgaATCTAAGGCGAATCAGAATGGCTTCATCAAAGACGACACAGTGGCGCCCAAGCAGGAACCCAAGGTTTCAAGCTCTGTATCTGCATCTGAGAATGACGCTGATCTTCCCCGGAAACTCCTGCAGGTTGAGTTTAAGTCCCTGACTGTGAGCGCCCCCTCAAGGCCAAAGCCTGGTCCTCTACAGAGCCGTGATCTGAATGGGAAGAACTTCAAACGCTTCCGCAAGGTACCCGTACCTGGGCTTGAGGGCTTGCCCAACATCATCGGTGGCTCAGATCTGGTGGCTCACAACCGCAGCAAAAGCTCTGAACTGGAGGAGTGGCTGAGAGATGCAGCAGAGGAGGAGAAACGACAGGAGCAAGAGGAAACTCTTGGAGACGATCTGTTCAGGTACAATCCAAAGCCCTCCAGAAGAAGATGAGCCGAATGAAATCAGGAAGCCATGTTTAGCATGATCCTACAGTTGTGTTCTACAGTTTCCATCCTGCAAGTTTTGCGTGGTTATAACGTTTATCTGATGTTTGCGTTCTAAAGTTCTGAACGTACTCTTAAAATTCACTTAAAAATAACTGTACTCTAAACCGTTCTTTAAACAGTGTCATGGAATAACCGCTTTTAGTTTTTGTGAAAGAGATGTGAGTTTGAAGAgcttttacattcattttaagaGCCTTTAAATGAAGTGAAGATTCCATATACTCTCACATCTATACTACATATATGAATGTTTATTATCTGTTTTGCTAAAGTTTTGCTAAAGCAACCATGATTTAAGAATAATTTAATGTGATGTgacacaattaaagaaatataaataaacatttaaaacaaaaacagacaatatattttatttagcatGTTCTCGTTGATTGGACTGGTACAGTAATAGACTAACAGTCTAATGACTGaatgtttctattttatatCAATACTTTTGTTTTGATTGAGGGCAGCAGAACATTGTGGTTAGGAGCTCATGTTCTATAACATTCAGAAACTTCTCTATTTTTAAGAGTATATTAACTGTGGTCACATGGTACATCAGATCATGGACTGTATCAagcctttacttttttttttaacctggtAACATTCTGCATTGACTGTTCGAAAATATTTTACAGaaacactatttaaaataaaagtttcaaCACGCAATGTCTACAGAAA

Function

NR:

description
nibrin

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
K10867 NBN, NBS1; nibrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674234.1 True 3399 mRNA 0.47 16 6885569 6905841

Neighbor

gene id symbol gene type direction distance location
fam189b fam189b coding upstream 6198 6861598 ~ 6879371 (+)
rab13 rab13,LOC107723501,LOC107714709 coding upstream 24745 6852783 ~ 6860824 (+)
LOC103021742 kcnn3,LOC108280396,LOC107595057,LOC107699550,LOC107723559,LOC107657645,LOC107714686 coding upstream 62527 6712421 ~ 6823042 (+)
snx27 snx27,snx27b,LOC108429939,LOC107699551,LOC107657641,LOC107714694 coding upstream 253833 6611718 ~ 6631736 (+)
LOC103023101 s10i,LOC100304668,LOC107582076,LOC106606010,LOC107657639 coding upstream 277615 6605504 ~ 6607954 (+)
gtpbp10 gtpbp10 coding downstream 29698 6935539 ~ 6951926 (+)
LOC103046789 LOC108429918,LOC108429917,LOC108257096,LOC108280559,LOC108266725,LOC108266736,LOC108266743 coding downstream 120452 7026293 ~ 7036746 (+)
LOC103043120 LOC108429949 coding downstream 143360 7049201 ~ 7051416 (+)
LOC103042602 NA coding downstream 170774 7076615 ~ 7081155 (+)
apoc2 NA coding downstream 178946 7084787 ~ 7089418 (+)
G97901 NA non-coding upstream 994 6883243 ~ 6884575 (+)
G97884 LOC103044954,LOC107599504,LOC103388254,LOC107589412,LOC101077558,LOC103356523,LOC108429942 non-coding upstream 34806 6774278 ~ 6850763 (+)
G97870 NA non-coding upstream 57990 6824918 ~ 6827579 (+)
G97896 NA non-coding upstream 73209 6811521 ~ 6812360 (+)
G97883 NA non-coding upstream 128497 6756716 ~ 6757072 (+)
G97930 NA non-coding downstream 211769 7117610 ~ 7125636 (+)
G97929 NA non-coding downstream 213982 7119823 ~ 7125239 (+)
G97938 NA non-coding downstream 313391 7219232 ~ 7219527 (+)
G97940 NA non-coding downstream 333690 7239531 ~ 7239765 (+)
G97942 rps19,LOC107657656,LOC100689943 non-coding downstream 354150 7259991 ~ 7280844 (+)
adar adar,LOC107723500 other upstream 203878 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 320566 6532516 ~ 6565003 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other upstream 502852 6280322 ~ 6382717 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other upstream 1035039 5807568 ~ 5850530 (+)
ndufaf6 ndufaf6 other upstream 1904622 4965470 ~ 4980947 (+)
apoc1 NA other downstream 156291 7062132 ~ 7066029 (+)
G97926 NA other downstream 162847 7068688 ~ 7070129 (+)
G97931 NA other downstream 221963 7127804 ~ 7130809 (+)
G98636 NA other downstream 2406565 9312406 ~ 9312803 (+)
G98840 NA other downstream 3090363 9996204 ~ 10002046 (+)

Expression


Co-expression Network