LOC111193438


Basic Information

Item Value
gene id LOC111193438
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7869033 ~ 7881591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674249.1
AGAAGCAcgtttgttttcttttagaggacatttgtttgattttagaGGACTTTCGAGAAACTTCGCAGCTTAAAATGGGGTTTTTCAGCTGCCTAAAGAagagaaagaagCCTAAGGAAGTTGTGAAGAATGATCTGGTGGATGAGATCAAAGACAccaaggagaagaaaaagaagagaagatggTGGCAGCGTGGCTTCATGAAGATTTTCTGCCCCTGTTTATCCTCTTCcacctcttcttcctctttatCCTCCCCCACCTTTTCTTCTCCTTCATCCTCCCCCACCTCTTCTTTATTTTCAGTCTCCCCATTCTCTTCTTTATCTCTATCTTCCCCCACCTCTTCATCCTCTTCTAGctcttcttcatcttcataCTTCCCCACCTCTCCTTCTTATGATCATTCCCTTGCCTTGCCTTTACCTGCCCCCCCTTACACCTACACAATCCCCACCCTGGGCGTGGCCAGGTTAGCTCCGCCTCAGAGATACTTTTTCTCTCCGGCGATCCGCAGCTCCACCTGTCCTCCTCCACTCATCCGCTCCTCAAGTGCTCCTTCACTCACTCATCCCTCTTCTACATACTTTCCTTtattctccccctctctctccatctccctcccCGACCTCTCTAAGTACTACCCTGACTCCCCCAAGGCTCAGAGGTCCAAgcCTCGGGTCCTAATCAACTCTTATGTTCGGAGTAAGGGTGTGTACGATCGGGAGCTGTCCGTCTTAAAGAGACGTCCGGCCCACACAAGCATTCAGGAGGTCCAGGACCGCTCTGTCGTTGATGTGAAGCAGCTTGGGCTTCCCAGCATTGTGAACACCTGCTTCATGAACGCCACCCTGCAGAGTCTGCTGGGTCTCTCCTGCTTCTGGACCCCCATCATAGAACAGCAGGACACCTGGTCTGACACTTCAGTCGACTCCACTATGCTCAGGTGTTTGGCAGAGCTGCAGCAGGCcaggttcagcagcagcagcaccacaaagcAGAAGATGAAGATTCTGAGAGCTCTGAAGAGATGCATCGCTGCCCGCTGCCCTGACTTTAAACATTACAGTCAACAGGATGCCCATGAGTTCTTAATGCTCTGTTTGCTCCAGCTGAAGGGGGAGGGAGAGGCTCTCAGGGCCTCCAACCTTTCCTACGTCTGTCCTGTTGCAAATTTTGAGTTTCAGCTGAAATCTGTGCTCACCTGCACCAGCTGTGGACTCCAGAGATCCAGAGTGGAGATTTACAACCACCTGTCCATCAACCTGGACTCCACTCTGAGAGGCAGCCTGCGCAGCTACTTCCAGGAAACAGATTTGGATTATTACTGCGAGTGTGAACTAGGCATTCAAGCAACTGAAGCGCAGGAGTTCGCCACCCTCCCACGgGTTCTGATTCTCCACATCAAGAGGTTCAAACTGATGGGCAGCGGTAAAAAGCTGAAGGGCGCGATGGACATCCCCGCCCAGCTGGACCTCTCTGAGTTTTCAGCCCAGGCTTCACCTGAACAGACTTGGACTAAGAAGTGTACAGCTAAATCTGTGAGAAAATCCAGCGTCAAGCCAGCGAGTGGAGGAGGACAGGATGAGGGAGGACAGCAAAGGAACTCTTCGGAACGTCCACCAAGGGGCCTCTACAGACTCCACAGCATCGTCTCTCATCTTGGTTGCAGTGTTAACAAGGGCCACTACATCAGCAATATTGTTCAGGACGGAGAAAGCTGGTTGTCATTCGATGACACGAGAGTGCACCACGCATTGGGGAAAACTGTCCTCAAGTGCACTGCAACAACAGCTTACCTGCTGTTCTACGTGCACAGGTACAACTTCACCTTTCAGCTTCACCTAACACATTTACAAAAAGCAGGAAGGAACTTGGAACAGAATGATCTCACGTTTCTTCTCATCTCTTTCTTCTCTGTTCTTCCCAGTGCTCCTACAGATTTAGACTGTGACAAACGTGAAGAGACCTGAGGAGGCTGAAGGAGGCTCAGGATGGACCTCAGTGGTGCACCATCAATCAACTCTCCACAAGGCACATAAATAAACAGACCAAAACCCTGCAAAAAACACTTAGTAGCACAATTTTGGGCACAATTGCGTTAACTGGAAAATCAAGGCCCACTTAAGATATAAGGCAATATGTTGGATTGATGGATTGTTCCAGGTTATAGAACAAGGATCTCAGCAGCAAGAACCACTGGAACAACAGCTGGGGAGCTGCTGGGATCACTGGAACATCATGGACATTGAGAAGGCCACTGGAAAAGGGTCTACAGAAATAAAGTGACAAGACTTTTCTGTCTTCCTTATATCTATTTGGCATGTATCAAGATGCCCAAAAAGATTGACCAGCCTGGCCCTCTATGATCCATTCCTGCCACACTTTAAACTGCCTGGACTCATTCATAACTGAGAACCTGTTCCTGCGTTAGCTATAGCCACATGCCAATCTAtctgtacagtttatttttgtaCAGTTGTTATTTGTTTGCGCTATACGGGTcgaccaaaggaggatgggttcctcttattgagccttggttcctcccaaggtttcttcctcttgtcatgagggagtttttccttgccactgttgccGCCACAACCTTGTGGTGCTCGTTCATAAGAGGCTCGGACCCGCCCTTATTTTAACAATGATCACGTAATCTGATATGCAGGTGTCTTTGGTCTGTTGCGCCTTTGTAGTGAATGGTGCTAGATTGTACAGTTTCTGTATatactaaatacatttaaaataaagttaaaaacaaaata
>XM_022674250.1
AGAAGCAcgtttgttttcttttagaggacatttgtttgattttagaGGACTTTCGAGAAACTTCGCAGCTTAAAATGGGGTTTTTCAGCTGCCTAAAGAagagaaagaagCCTAAGGAAGTTGTGAAGAATGATCTGGTGGATGAGATCAAAGACAccaaggagaagaaaaagaagagaagatggTGGCAGCGTGGCTTCATGAAGATTTTCTGCCCCTGTTTATCCTCTTCcacctcttcttcctctttatCCTCCCCCACCTTTTCTTCTCCTTCATCCTCCCCCACCTCTTCTTTATTTTCAGTCTCCCCATTCTCTTCTTTATCTCTATCTTCCCCCACCTCTTCATCCTCTTCTAGctcttcttcatcttcataCTTCCCCACCTCTCCTTCTTATGATCATTCCCTTGCCTTGCCTTTACCTGCCCCCCCTTACACCTACACAATCCCCACCCTGGGCGTGGCCAGGTTAGCTCCGCCTCAGAGATACTTTTTCTCTCCGGCGATCCGCAGCTCCACCTGTCCTCCTCCACTCATCCGCTCCTCAAGTGCTCCTTCACTCACTCATCCCTCTTCTACATACTTTCCTTtattctccccctctctctccatctccctcccCGACCTCTCTAAGTACTACCCTGACTCCCCCAAGGCTCAGAGGTCCAAgcCTCGGGTCCTAATCAACTCTTATGTTCGGAGTAAGGGTGTGTACGATCGGGAGCTGTCCGTCTTAAAGAGACGTCCGGCCCACACAAGCATTCAGGAGGTCCAGGACCGCTCTGTCGTTGATGTGAAGCAGCTTGGGCTTCCCAGCATTGTGAACACCTGCTTCATGAACGCCACCCTGCAGAGTCTGCTGGGTCTCTCCTGCTTCTGGACCCCCATCATAGAACAGCAGGACACCTGGTCTGACACTTCAGTCGACTCCACTATGCTCAGGTGTTTGGCAGAGCTGCAGCAGGCcaggttcagcagcagcagcaccacaaagcAGAAGATGAAGATTCTGAGAGCTCTGAAGAGATGCATCGCTGCCCGCTGCCCTGACTTTAAACATTACAGTCAACAGGATGCCCATGAGTTCTTAATGCTCTGTTTGCTCCAGCTGAAGGGGGAGGGAGAGGCTCTCAGGGCCTCCAACCTTTCCTACGTCTGTCCTGTTGCAAATTTTGAGTTTCAGCTGAAATCTGTGCTCACCTGCACCAGCTGTGGACTCCAGAGATCCAGAGTGGAGATTTACAACCACCTGTCCATCAACCTGGACTCCACTCTGAGAGGCAGCCTGCGCAGCTACTTCCAGGAAACAGATTTGGATTATTACTGCGAGTGTGAACTAGGCATTCAAGCAACTGAAGCGCAGGAGTTCGCCACCCTCCCACGgGTTCTGATTCTCCACATCAAGAGGTTCAAACTGATGGGCAGCGGTAAAAAGCTGAAGGGCGCGATGGACATCCCCGCCCAGCTGGACCTCTCTGAGTTTTCAGCCCAGGCTTCACCTGAACAGACTTGGACTAAGAAGTGTACAGCTAAATCTGTGAGAAAATCCAGCGTCAAGCCAGCGAGTGGAGGAGGACAGGATGAGGGAGGACAGCAAAGGAACTCTTCGGAACGTCCACCAAGGGGCCTCTACAGACTCCACAGCATCGTCTCTCATCTTGGTTGCAGTGTTAACAAGGGCCACTACATCAGCAATATTGTTCAGGACGGAGAAAGCTGGTTGTCATTCGATGACACGAGAGTGCACCACGCATTGGGGAAAACTGTCCTCAAGTGCACTGCAACAACAGCTTACCTGCTGTTCTACGTGCACAGTGCTCCTACAGATTTAGACTGTGACAAACGTGAAGAGACCTGAGGAGGCTGAAGGAGGCTCAGGATGGACCTCAGTGGTGCACCATCAATCAACTCTCCACAAGGCACATAAATAAACAGACCAAAACCCTGCAAAAAACACTTAGTAGCACAATTTTGGGCACAATTGCGTTAACTGGAAAATCAAGGCCCACTTAAGATATAAGGCAATATGTTGGATTGATGGATTGTTCCAGGTTATAGAACAAGGATCTCAGCAGCAAGAACCACTGGAACAACAGCTGGGGAGCTGCTGGGATCACTGGAACATCATGGACATTGAGAAGGCCACTGGAAAAGGGTCTACAGAAATAAAGTGACAAGACTTTTCTGTCTTCCTTATATCTATTTGGCATGTATCAAGATGCCCAAAAAGATTGACCAGCCTGGCCCTCTATGATCCATTCCTGCCACACTTTAAACTGCCTGGACTCATTCATAACTGAGAACCTGTTCCTGCGTTAGCTATAGCCACATGCCAATCTAtctgtacagtttatttttgtaCAGTTGTTATTTGTTTGCGCTATACGGGTcgaccaaaggaggatgggttcctcttattgagccttggttcctcccaaggtttcttcctcttgtcatgagggagtttttccttgccactgttgccGCCACAACCTTGTGGTGCTCGTTCATAAGAGGCTCGGACCCGCCCTTATTTTAACAATGATCACGTAATCTGATATGCAGGTGTCTTTGGTCTGTTGCGCCTTTGTAGTGAATGGTGCTAGATTGTACAGTTTCTGTATatactaaatacatttaaaataaagttaaaaacaaaata
>XM_022674251.1
tgatttatgccccgtgtcaccctgtctgaagggtgtttggacaaactgttaaaatttctggatctcagaatgcAGTGGGAGAACGGAAGTGTGCTATTCCTTAAAGagaaagaagCCTAAGGAAGTTGTGAAGAATGATCTGGTGGATGAGATCAAAGACAccaaggagaagaaaaagaagagaagatggTGGCAGCGTGGCTTCATGAAGATTTTCTGCCCCTGTTTATCCTCTTCcacctcttcttcctctttatCCTCCCCCACCTTTTCTTCTCCTTCATCCTCCCCCACCTCTTCTTTATTTTCAGTCTCCCCATTCTCTTCTTTATCTCTATCTTCCCCCACCTCTTCATCCTCTTCTAGctcttcttcatcttcataCTTCCCCACCTCTCCTTCTTATGATCATTCCCTTGCCTTGCCTTTACCTGCCCCCCCTTACACCTACACAATCCCCACCCTGGGCGTGGCCAGGTTAGCTCCGCCTCAGAGATACTTTTTCTCTCCGGCGATCCGCAGCTCCACCTGTCCTCCTCCACTCATCCGCTCCTCAAGTGCTCCTTCACTCACTCATCCCTCTTCTACATACTTTCCTTtattctccccctctctctccatctccctcccCGACCTCTCTAAGTACTACCCTGACTCCCCCAAGGCTCAGAGGTCCAAgcCTCGGGTCCTAATCAACTCTTATGTTCGGAGTAAGGGTGTGTACGATCGGGAGCTGTCCGTCTTAAAGAGACGTCCGGCCCACACAAGCATTCAGGAGGTCCAGGACCGCTCTGTCGTTGATGTGAAGCAGCTTGGGCTTCCCAGCATTGTGAACACCTGCTTCATGAACGCCACCCTGCAGAGTCTGCTGGGTCTCTCCTGCTTCTGGACCCCCATCATAGAACAGCAGGACACCTGGTCTGACACTTCAGTCGACTCCACTATGCTCAGGTGTTTGGCAGAGCTGCAGCAGGCcaggttcagcagcagcagcaccacaaagcAGAAGATGAAGATTCTGAGAGCTCTGAAGAGATGCATCGCTGCCCGCTGCCCTGACTTTAAACATTACAGTCAACAGGATGCCCATGAGTTCTTAATGCTCTGTTTGCTCCAGCTGAAGGGGGAGGGAGAGGCTCTCAGGGCCTCCAACCTTTCCTACGTCTGTCCTGTTGCAAATTTTGAGTTTCAGCTGAAATCTGTGCTCACCTGCACCAGCTGTGGACTCCAGAGATCCAGAGTGGAGATTTACAACCACCTGTCCATCAACCTGGACTCCACTCTGAGAGGCAGCCTGCGCAGCTACTTCCAGGAAACAGATTTGGATTATTACTGCGAGTGTGAACTAGGCATTCAAGCAACTGAAGCGCAGGAGTTCGCCACCCTCCCACGgGTTCTGATTCTCCACATCAAGAGGTTCAAACTGATGGGCAGCGGTAAAAAGCTGAAGGGCGCGATGGACATCCCCGCCCAGCTGGACCTCTCTGAGTTTTCAGCCCAGGCTTCACCTGAACAGACTTGGACTAAGAAGTGTACAGCTAAATCTGTGAGAAAATCCAGCGTCAAGCCAGCGAGTGGAGGAGGACAGGATGAGGGAGGACAGCAAAGGAACTCTTCGGAACGTCCACCAAGGGGCCTCTACAGACTCCACAGCATCGTCTCTCATCTTGGTTGCAGTGTTAACAAGGGCCACTACATCAGCAATATTGTTCAGGACGGAGAAAGCTGGTTGTCATTCGATGACACGAGAGTGCACCACGCATTGGGGAAAACTGTCCTCAAGTGCACTGCAACAACAGCTTACCTGCTGTTCTACGTGCACAGGTACAACTTCACCTTTCAGCTTCACCTAACACATTTACAAAAAGCAGGAAGGAACTTGGAACAGAATGATCTCACGTTTCTTCTCATCTCTTTCTTCTCTGTTCTTCCCAGTGCTCCTACAGATTTAGACTGTGACAAACGTGAAGAGACCTGAGGAGGCTGAAGGAGGCTCAGGATGGACCTCAGTGGTGCACCATCAATCAACTCTCCACAAGGCACATAAATAAACAGACCAAAACCCTGCAAAAAACACTTAGTAGCACAATTTTGGGCACAATTGCGTTAACTGGAAAATCAAGGCCCACTTAAGATATAAGGCAATATGTTGGATTGATGGATTGTTCCAGGTTATAGAACAAGGATCTCAGCAGCAAGAACCACTGGAACAACAGCTGGGGAGCTGCTGGGATCACTGGAACATCATGGACATTGAGAAGGCCACTGGAAAAGGGTCTACAGAAATAAAGTGACAAGACTTTTCTGTCTTCCTTATATCTATTTGGCATGTATCAAGATGCCCAAAAAGATTGACCAGCCTGGCCCTCTATGATCCATTCCTGCCACACTTTAAACTGCCTGGACTCATTCATAACTGAGAACCTGTTCCTGCGTTAGCTATAGCCACATGCCAATCTAtctgtacagtttatttttgtaCAGTTGTTATTTGTTTGCGCTATACGGGTcgaccaaaggaggatgggttcctcttattgagccttggttcctcccaaggtttcttcctcttgtcatgagggagtttttccttgccactgttgccGCCACAACCTTGTGGTGCTCGTTCATAAGAGGCTCGGACCCGCCCTTATTTTAACAATGATCACGTAATCTGATATGCAGGTGTCTTTGGTCTGTTGCGCCTTTGTAGTGAATGGTGCTAGATTGTACAGTTTCTGTATatactaaatacatttaaaataaagttaaaaacaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674249.1 False 2777 mRNA 0.48 13 7869033 7881591
XM_022674250.1 False 2666 mRNA 0.49 14 7869033 7881591
XM_022674251.1 True 2782 mRNA 0.49 13 7870254 7881591

Neighbor

gene id symbol gene type direction distance location
LOC103045356 ywhabl,LOC107723438,LOC107570839,LOC108265441,LOC107595301,LOC108429958,LOC105896388 coding upstream 2438 7848099 ~ 7866595 (+)
LOC103045564 LOC107570829 coding upstream 109237 7736322 ~ 7759796 (+)
LOC111193393 NA coding upstream 580426 7286540 ~ 7288607 (+)
apoc2 NA coding upstream 779615 7084787 ~ 7089418 (+)
LOC103042602 NA coding upstream 787878 7076615 ~ 7081155 (+)
smg9 smg9,LOC107699520,LOC107595308 coding downstream 10184 7891775 ~ 7900812 (+)
spaca6 NA coding downstream 179372 8060963 ~ 8074397 (+)
LOC103021308 LOC108429924,LOC108265369,LOC107699476,LOC107714672,LOC107595349 coding downstream 263373 8144964 ~ 8150644 (+)
LOC103023078 NA coding downstream 271868 8153459 ~ 8168108 (+)
LOC103022775 NA coding downstream 291964 8173555 ~ 8197686 (+)
G98115 NA non-coding upstream 33829 7781558 ~ 7835204 (+)
G98117 NA non-coding upstream 75706 7791023 ~ 7793327 (+)
G97988 NA non-coding upstream 107209 7761185 ~ 7761824 (+)
G97980 NA non-coding upstream 142883 7724230 ~ 7726150 (+)
G97982 NA non-coding upstream 146724 7721279 ~ 7722309 (+)
G98133 NA non-coding downstream 33928 7915519 ~ 7917730 (+)
G98185 NA non-coding downstream 138983 8020574 ~ 8096610 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding downstream 355999 8237590 ~ 8244865 (+)
G98240 NA non-coding downstream 366264 8247855 ~ 8257070 (+)
G98234 NA non-coding downstream 395479 8277070 ~ 8277823 (+)
G97931 NA other upstream 738224 7127804 ~ 7130809 (+)
G97926 NA other upstream 798904 7068688 ~ 7070129 (+)
apoc1 NA other upstream 803004 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1187342 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1304030 6532516 ~ 6565003 (+)
G98636 NA other downstream 1430815 9312406 ~ 9312803 (+)
G98840 NA other downstream 2114613 9996204 ~ 10002046 (+)
G98845 NA other downstream 2178842 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 2290962 10172553 ~ 10178459 (+)
G98967 NA other downstream 2612200 10493791 ~ 10498518 (+)

Expression


Co-expression Network