LOC103025184 (LOC108265385)


Basic Information

Item Value
gene id LOC103025184
gene name LOC108265385
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8283146 ~ 8287986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674265.1
GGCTTCTCTCCATGAGATTTTGCTGAGCATCAGACGATCACTGCGATCATGAAGTACATCATTTTACTGGCTCTGTTTGCCGTGGCATTCGCCGCCCCCATTGACGACGATGATAAGATCGTCGGAGGGTACGTGTGCACGAAGAACGGCGTGCCCTACCAGGCTTCTCTGAACGTtggatatcatttttgtggagGCTCTCTGATCACCAGCCAGTGGGTCGTGTCTGCTGCCCATTGCTACAAGTCCTCTATCCAGGTGCGTCTTGGAGAGCACAACATTGACGTCAATGAGGGAACTGAGCAGTTCATCAGTTCTTCCAAGGTCATCAGACACCccagctacagcagcagcacccTGAACAACGACATCATGCTCATCAAGCTGCAGTCCGCTGCCAGTATCAACAGCTACGTGCGCACCGTGTCCCTGCCCAGCAGCTGCGCCTCCGCCGGTACCTACTGCCTGGTCTCCGGATGGGGAAACACCCTCAGCAGTGGCACAAGCTACCCCTCCACTCTGAGATGCCTGGACATCCCCATCCTGAGCACCTCCTCATGCCAGAGCTCCTACCCTGGTCAGATCACCTCCAACATGTTCTGTGCTGGATTCCTGGAGGGAGGCAAAGACTCTTGCCAGGGAGACTCTGGCGGCCCCGTCGTGTGCAACAATCAGCTGCAGGGTATCGTGTCCTGGGGTTACGGCTGCGCTCAGAGGAACAAGCCTGGTGTCTACACCAAGGTCTGCAACTACAACTCCTGGATCACCAGCACCATTAACAGCAACTAAAGTGCTGTAGtatctgaaaaaaacaacaacaataaaatgtgttgcAAAAGAAGAAtgga

Function

NR:

description
PREDICTED: trypsin-3-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674265.1 True 848 mRNA 0.54 5 8283146 8287986

Neighbor

gene id symbol gene type direction distance location
LOC103024656 si:ch211-261d7.3,LOC108429975,LOC107714745,LOC107699514 coding upstream 6535 8271514 ~ 8276611 (+)
LOC103024130 NA coding upstream 53176 8223512 ~ 8229970 (+)
LOC103023603 NA coding upstream 61300 8216249 ~ 8221846 (+)
LOC103021850 NA coding upstream 69274 8200537 ~ 8213872 (+)
LOC103022775 NA coding upstream 85460 8173555 ~ 8197686 (+)
LOC103044944 NA coding downstream 2744 8290730 ~ 8294447 (+)
LOC103047702 NA coding downstream 7412 8295398 ~ 8311987 (+)
LOC107197655 LOC108429979 coding downstream 26676 8314662 ~ 8320505 (+)
LOC103025484 NA coding downstream 33407 8321393 ~ 8335355 (+)
tyrobp tyrobp coding downstream 70567 8358553 ~ 8364613 (+)
G98232 NA non-coding upstream 3944 8278004 ~ 8279202 (+)
G98234 NA non-coding upstream 5323 8277070 ~ 8277823 (+)
G98240 NA non-coding upstream 26076 8247855 ~ 8257070 (+)
G98237 LOC108429911,LOC108429926,LOC108265257 non-coding upstream 38281 8237590 ~ 8244865 (+)
G98185 NA non-coding upstream 186536 8020574 ~ 8096610 (+)
G98248 NA non-coding downstream 48440 8336426 ~ 8338117 (+)
G98250 NA non-coding downstream 52058 8340044 ~ 8347080 (+)
G98249 NA non-coding downstream 60352 8348338 ~ 8349508 (+)
G98255 NA non-coding downstream 86648 8374634 ~ 8374942 (+)
G98256 NA non-coding downstream 92894 8380880 ~ 8381089 (+)
G97931 NA other upstream 1152337 7127804 ~ 7130809 (+)
G97926 NA other upstream 1213017 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1217117 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 1601455 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 1718143 6532516 ~ 6565003 (+)
G98636 NA other downstream 1024420 9312406 ~ 9312803 (+)
G98840 NA other downstream 1708218 9996204 ~ 10002046 (+)
G98845 NA other downstream 1772447 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1884567 10172553 ~ 10178459 (+)
G98967 NA other downstream 2205805 10493791 ~ 10498518 (+)

Expression


Co-expression Network