LOC103029611 (LOC108443721)


Basic Information

Item Value
gene id LOC103029611
gene name LOC108443721
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8688272 ~ 8700977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674280.1
agagagagagagagggaagggaaATGCTGCAGTCCCATTGCCTTGCATAACATACGCTGAGCCTCGCGCCGCACATAAGGGCTTCATGTGAGGCGGCGCAAAGAGAACGAGAAGACGGGGACTTCCTTCGCCCTCGACCCTCCAGGGCCCACTGCAGAGGGGTGGaggggaggaggagaagaggagagacGGGGGGGAGACGAGAAGACGGAAGAGGGGACGAGGGACAGGAGGAAGGGGGACAAGCAAGCCAAGCGCCGGACATGGAGGCGATTTTTACGAGGAGCGGTTTGGGCATGCTTCTTTAAGCCTGGACAAAGGATGGCTAATCAAGGATAGAGTGCCTTTGCACttggcagagagaaagagagagagagagagagattgaaggagagagagagagagagagaggaaagacaggagagaagagagagagagagaagagagagagagatatgttgACACCACTATAGATCTAAGGTACAGAAACTACTAAGCACTACTAAGGAGATGGTTCCACATGAAGACGCCGGGATTCTGCTCGAAAGATTCTGCTTCAACACCTAATCTCAATTGTACGTTAAGTAGAAAGCAGACTGTGGAACAATGAACTTCTTGACACCAAAGTCCTACTTTTAAACCCAGACCACTCAGAGTAGTAGAGCACGGGAGCAGAAAAGCGTAAAGATCATGAAGTCCAACCAGGAGCGCAGTAATGAGTGCCTGCCTCCAAAGAAGAGAGAAATCCTGGCGCTTGAGGAGCGACAGGTGCTGGTAGCATCAACCGTGAGTGAGAGCCAGAGCGGAGAGAACCTGGCATGGCTTGCAAGCATAGCCAGTATGGCCAGCATGGCCACCGTTCCCAACCATGTTCCATCACGGAGCAACGTTTCCCATGTTGACAGCCCTTCACCATCAGCCAAGGCTCCGACTGTAGTGACAGAGTACCTACCAGAACCCACCTCTGCTTCCACCAGCTCTTTGTCATCTTATAGAAGTTCCACGCCCAAAGGAGGCTTCTCTGGGGCCACCACAATAACAGCCAACCCTGCCGTCCTTTCCTCCACCTTTGCCCAAACAACAGGTTCCATCCAGCACACTCAGTTGCCACCTAACCTTCAAATCATTGGACCCTACACTGGCTACATCTCCTCCCAGATAGTTCCGGCCGCAGCAAGTCCATCCCAATCTTGTAGACCCAACCAAGAGGTTTATACTGCCACAGGTATCATTCCTCAAGCATCTAATGACAACTCGCATAAGCAACATTTGATTTCAACCTTGCCTAATGTAGCCCACACAACCAGCCAGTGCGTCCAGGTAGAGGGTGCCTCTGTTGGCTTGACAGTCACATCCCCAACTTCTCAAGTGCCCATTCAAATTCACCCCCATTCAGCTGTTCTTGCTCCTCATGGCCTGGCCCTTGGTCCCTCTCAAGTGCTTGTTCATTACGCTGATGGCATTGTCACCAAACACCCAGACCCCCACAGCAGAGATTTGCAGAACGGTTCTTTGGGAGAGGTCACAGTGGTCAAACACAGCACCAGTGTGGTCAAGGGAATCTCTGGCAAACCAGAGAGTATCGAGAGCCAAAGGCAGAATCACAACCTTGGTCTCCAGGCCCAAACTCAGGTCTTGCTCCCTGCTGAGTATGCCACGCATGATAGTGCAGGATTTCAGACATCGTTAATGCTGGTGTCAAGCAACCACATTGTGGCCAATAACAGTACAGAGTTTCAGACTGCTCTGGACAAGGACCAGTCGTCAACTCTGGCTCGAGTTGAAAGAACAGGAATATCTATGGTGGAGCCAGTCTCCAGAGTTTCCTCCCTCACTCTGTCATCTTCCGATGGCCTGGCAGCATCTCTAGCTTCGAATCTTTCACCCCATTCCCTCCTGCAGACATCTCCCGGTGCCCCTGCCCAGGAACTTTCCACAAGCCTTTACTCAGCCACACAGCTACCCATCATTGGCTACATCACCAGCACATCCGGGGGACCCCAGCAAGCAGTGGCCACGTACCCTAGCAACCTTCCACAACATCTAGTTATCTCAGGCAGCCCCTCACTCCTTATCCCTGTGAGTGCTGGCAACATTACCACGTCATCTGCAGAGACAGAAGTCACTCGCTGCTCTATTCCCACCATACCCTCCACCAACGTTCCGACTGTTCCCACAGGCCTGCCTCAGGCTTACATCACTGCAGCCACACCTGCTGTTGCGAACCCTGTTGTTGTCCCTAATGGCAAAGAGGTCGCTGTACCTGAGCCTCATCAGCCTCATCAGCCTCATCAGCCTCATCAGGTTCATCAGGTTCATCATACGACGAATGCGATACAGAGTTCCACACAGGTGCAACTGCCTGTCTTTTCAACAGAGGTGGTTGCACCTCCAGCTCCTGTAATCACCCCAGCACCAACCAGCCCTCAAAATGCACCGCTGTCTCCTACATCAGCCCTGCCTCCATACTTTATGAAGGGCTCTATCATCCAACTGGCCGACGGGGAGCTCAAGCGGGTGGAGGACCTGAGGACAGAGGACTTCCTGCAGAGCGCAGAAGTTAGCGGTGAACTGAAAATCGATTCAAGCACAGTCGAGCGGATAGACACCAGCAGAACTCCTGACGCAGTCATCATACAGTTCTCAGTTGGCGAACACAAAGCACAGgtgtgtgtggaggtgcTGGTGGAGTACCCTTTCTTTGTGTTTGGTCAGGGATGGTCGTCCTGCTGTCCGGACCGCACTACCCAGTTGCTAGCTTTGTCCTGTGCTAAGCTCTCAGTGGGTGACGTGTGCATCTCCCTCACTCTGAAGAGCCTGAGGAATGGTGCTCTGAGTAAAGACCAAACTTTTGGCACTTTGAAGAACCACAACAACATTCATCTGAAAACAGCCAAGACTAACGGACAGGCAGGAGACAGGCCGACTCCGAGAGAGGATCAGAGGAACGGGAAGGTTTTTTTTAGGTCAGAAGGGGAGCAGAGATTGGAAAGCGCCGGGTTTGAGAGTCTCAACTCTGGGAAAGGAGTGATACTCTCGAAGGATGAAGGAGAGGGGAAAGCTCAAATCGTTGTCGGACGCAAGAGGAGGTGGTCTGCCCCCGAGAAAGGGGAGATAGGAAGGTCGCAGGAGAGCGAGCCCCCTGAAACTCTGCCCAAACTGTCCTTCCTCTCGCAGGAGATTAAGGTAAACATAGAGGGGAGGTCCAGTATGGCGGTTCGTCCTTCTGATTCCCAGAAGAGACAAGGCATCTTCTGAAGGTTGACTGTGTTTCAATTATTCAGTGTTTCaataatttaaactaaaaaaaaaccaacaaaacaaaatacaaaataacccAAAACCTGAATTCAGTTCACTGTCGGAAAACCATACTTTTAGTTGTTCCCTTTTAGTGACTTGAGAACTGAAATAAACAGACATAAACCCATAAATGCAGCAGGTCAAGACTGACAGGATTTATTTTTGTGATGATTAGTTTCCGTCTCATGatagttttcctttttttttttttttttagactaatGTAACATAAACTAATTTTGTGTGACAGTATTTACACTAtgtgttttttgtaataaaaattaaaacatataacGTATAGTTTCTGACAACTGTCTTGGGGCATATATATATTGAGAGggtctttttccttttttttttttgattaagtTAATTTTGCTctcatttatcttatttttttgcactttgcaGTCTACTTTCATGTTGAGTGTAGCATCATTGCAAATCAGTCCTAATGAtgagtgaaaatataaaaaaaatatatatatggaccATTAGGTTAGAGGGACTGTTAGAAATTTGAACTGAAATTTCTGTGAGGAATATggaaaactgaaatatacttaaagcTAAATTTGGGATGTAACcgctatatttatattatttaaaatggggGTTTCAttgtagaaacaaacaaaaaaaacagatataaccAAATCATGCATAAATAATATCCATTGTGCAATTTACAAAATTCTAGAGATTCTGTAGGATTTTGTAATTATTTGATGCATTTGCTTTCAAATCGGAGCGTTTTAATAACCCAAAAGAGTATAACTGTAtcatttcagtgtgtaaatAGATGGTATAACGCCCTTGTAAACCCTATTTAAAGCCAGTAGTTGGTAAACAGCTTAAAAAAGCTCATTGCTACATTACTGAACTGTCACTAGAGTGAAATAAGCACATTTTGTGGTATTTTGCattagaataattttaaaaGTCCATAGTTTTGCTCCCTTAATTAAACAgtaatattgtgattataccacagttccattatcgctgtttattaagaaaatttgagttaaagaggacataGATCATAAAATATGATCTgcttggttataaacactccgcaagttaaaaaagttccattgctgctctgtttgtagctgcactgtttggcttgtaagcgctgtatCGCTTCTAGGTTACCTgcatgtggcagagtaatacacagagagcttcggttacagtgcattaccggctgataatggcactcatagtaCACCTCTCAGCCAGTCACACTGCAGGGCCAGAACTAACTGCTTAATAACTGGCTACGCATTACTATATTACGTT

Function

NR:

description
PREDICTED: ataxin-1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674280.1 True 4608 mRNA 0.47 3 8688272 8700977

Neighbor

gene id symbol gene type direction distance location
LOC111193442 LOC108438282 coding upstream 28004 8648953 ~ 8660268 (+)
derl1 derl1,LOC107714924,LOC107699495,LOC107595682,LOC107736822,LOC107657695 coding upstream 66932 8607571 ~ 8621340 (+)
LOC103028148 tomm40,LOC108438269,LOC107723430,LOC108272680,LOC107699493,LOC107657699 coding upstream 87560 8591025 ~ 8600712 (+)
LOC103021731 LOC108438272 coding upstream 160915 8514063 ~ 8527357 (+)
tbc1d31 tbc1d31 coding upstream 181187 8482729 ~ 8507085 (+)
LOC103030255 dtnbp1,LOC107593648 coding downstream 22059 8723036 ~ 8733890 (+)
osbpl8 osbpl8,LOC107555879 coding downstream 57151 8758128 ~ 8795780 (+)
nap1l1 nap1l1,LOC106576514,LOC106609764 coding downstream 98288 8799265 ~ 8815140 (+)
LOC103033147 phlda1 coding downstream 117936 8818913 ~ 8821189 (+)
LOC111193444 NA coding downstream 161763 8862740 ~ 8895597 (+)
G98285 nsmce2 non-coding upstream 81217 8602977 ~ 8607055 (+)
G98287 NA non-coding upstream 107342 8580573 ~ 8580930 (+)
G98286 NA non-coding upstream 108810 8579229 ~ 8579462 (+)
G98283 NA non-coding upstream 135892 8552063 ~ 8552380 (+)
G98282 NA non-coding upstream 145843 8541326 ~ 8542429 (+)
G98429 NA non-coding downstream 32994 8733971 ~ 8734240 (+)
G98430 NA non-coding downstream 35246 8736223 ~ 8736951 (+)
G98432 NA non-coding downstream 40483 8741460 ~ 8742448 (+)
G98436 NA non-coding downstream 49659 8750636 ~ 8751485 (+)
LOC111193443 NA non-coding downstream 161898 8862875 ~ 8893262 (+)
G97931 NA other upstream 1557463 7127804 ~ 7130809 (+)
G97926 NA other upstream 1618143 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1622243 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2006581 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2123269 6532516 ~ 6565003 (+)
G98636 NA other downstream 611429 9312406 ~ 9312803 (+)
G98840 NA other downstream 1295227 9996204 ~ 10002046 (+)
G98845 NA other downstream 1359456 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1471576 10172553 ~ 10178459 (+)
G98967 NA other downstream 1792814 10493791 ~ 10498518 (+)

Expression


Co-expression Network