LOC103030255 (dtnbp1,LOC107593648)


Basic Information

Item Value
gene id LOC103030255
gene name dtnbp1,LOC107593648
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8723036 ~ 8733890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674283.1
CGCGGCTCAGCCGAGGGCGCCGTTCTCGTAGAGGTGCAGAAAGTAGTGTAACAGACTGACGTTAGCTTAGCATGACTTTCTCTCCGCGGCAGCCGTTTAAAACACGTCCTGTCTGTAACAGAACCGGGTTCAGCGGGGCGGCAGCGGGGTTTGGGGGTATGAGCAGCGGTGGAGGGAGCCGACAGGAGCTTTAATGCGGAGTTAAGAGCCTGAGGAGATACGAGGTGAGAGATGTTTGAAAATTTCAGGGAGAAACTGCAGACAGTGCAGCAGGACTTCACCACAGGAATTAAGACCCTGAGCGACAAGTCCAAGGACGCCAAAGTGAAGAAGAAACAGAGAAGAGAAGAACATCTTCCTCAGTACTCAGCTGGAGTGGAAGTGTTGAACCGATATGAAGACACTTGGGTGACTCTGCACAAACGAACAAAAGAATGTGCCAAAGCTGCAGAAACAGTGGACGGGGAGGTGGTGATGCTGTCTGCACACTGGGAGAGGAGACGAGGAGCCCTGATGGAGCTGCAGGAACAGCTACAGCAAATACCTGCCTTCCTCACAGACCTGGAGACCATCACGTCTCGAATCGCTCAGCTGGAAGCAGACTTTGAAGAGATGGAGAGTCATCTAATGTACCTGGACAACCTGTGCGGTCAGTGTGAGCAACAACGCTTCAAGCACTTTCAAATCCTACAGCTGGAAAactacaagaagaagaagagGAAAGAACTGGAGTCTCTAAAAG
>XM_022674284.1
TCAGCCGAGGGCGCCGTTCTCGTAGAGGTGCAGAAAGTAGTGTAACAGACTGACGTTAGCTTAGCATGACTTTCTCTCCGCGGCAGCCGTTTAAAACACGTCCTGTCTGTAACAGAACCGGGTTCAGCGGGGCGGCAGCGGGGTTTGGGGGTATGAGCAGCGGTGGAGGGAGCCGACAGGAGCTTTAATGCGGAGTTAAGAGCCTGAGGAGATACGAGGTGAGAGATGTTTGAAAATTTCAGGGAGAAACTGCAGACAGTGCAGCAGGACTTCACCACAGGAAGAGAAGAACATCTTCCTCAGTACTCAGCTGGAGTGGAAGTGTTGAACCGATATGAAGACACTTGGGTGACTCTGCACAAACGAACAAAAGAATGTGCCAAAGCTGCAGAAACAGTGGACGGGGAGGTGGTGATGCTGTCTGCACACTGGGAGAGGAGACGAGGAGCCCTGATGGAGCTGCAGGAACAGCTACAGCAAATACCTGCCTTCCTCACAGACCTGGAGACCATCACGTCTCGAATCGCTCAGCTGGAAGCAGACTTTGAAGAGATGGAGAGTCATCTAATGTACCTGGACAACCTGTGCGGTCAGTGTGAGCAACAACGCTTCAAGCACTTTCAAATCCTACAGCTGGAAAactacaagaagaagaagagGAAAGAACTGGAGTCTCTAAAAG

Function

symbol description
dtnbp1 Involved in neuron projection development. Located in several cellular components, including midbody; postsynaptic density; and synaptic vesicle membrane. Part of BLOC-1 complex. Implicated in Hermansky-Pudlak syndrome 7 and schizophrenia. Biomarker of temporal lobe epilepsy.

NR:

description
PREDICTED: dysbindin isoform X2

GO: NA

KEGG:

id description
K20189 DTNBP1, BLOC1S8; dysbindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674283.1 True 742 mRNA 0.51 7 8723036 8733890
XM_022674284.1 False 682 mRNA 0.51 6 8723042 8733890

Neighbor

gene id symbol gene type direction distance location
LOC103029611 LOC108443721 coding upstream 22059 8688272 ~ 8700977 (+)
LOC111193442 LOC108438282 coding upstream 62768 8648953 ~ 8660268 (+)
derl1 derl1,LOC107714924,LOC107699495,LOC107595682,LOC107736822,LOC107657695 coding upstream 101696 8607571 ~ 8621340 (+)
LOC103028148 tomm40,LOC108438269,LOC107723430,LOC108272680,LOC107699493,LOC107657699 coding upstream 122324 8591025 ~ 8600712 (+)
LOC103021731 LOC108438272 coding upstream 195679 8514063 ~ 8527357 (+)
osbpl8 osbpl8,LOC107555879 coding downstream 24238 8758128 ~ 8795780 (+)
nap1l1 nap1l1,LOC106576514,LOC106609764 coding downstream 65375 8799265 ~ 8815140 (+)
LOC103033147 phlda1 coding downstream 85023 8818913 ~ 8821189 (+)
LOC111193444 NA coding downstream 128850 8862740 ~ 8895597 (+)
krr1 krr1 coding downstream 182686 8916576 ~ 8926508 (+)
G98285 nsmce2 non-coding upstream 115981 8602977 ~ 8607055 (+)
G98287 NA non-coding upstream 142106 8580573 ~ 8580930 (+)
G98286 NA non-coding upstream 143574 8579229 ~ 8579462 (+)
G98283 NA non-coding upstream 170656 8552063 ~ 8552380 (+)
G98282 NA non-coding upstream 180607 8541326 ~ 8542429 (+)
G98429 NA non-coding downstream 81 8733971 ~ 8734240 (+)
G98430 NA non-coding downstream 2333 8736223 ~ 8736951 (+)
G98432 NA non-coding downstream 7570 8741460 ~ 8742448 (+)
G98436 NA non-coding downstream 16746 8750636 ~ 8751485 (+)
LOC111193443 NA non-coding downstream 128985 8862875 ~ 8893262 (+)
G97931 NA other upstream 1592227 7127804 ~ 7130809 (+)
G97926 NA other upstream 1652907 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1657007 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2041345 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2158033 6532516 ~ 6565003 (+)
G98636 NA other downstream 578516 9312406 ~ 9312803 (+)
G98840 NA other downstream 1262314 9996204 ~ 10002046 (+)
G98845 NA other downstream 1326543 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1438663 10172553 ~ 10178459 (+)
G98967 NA other downstream 1759901 10493791 ~ 10498518 (+)

Expression


Co-expression Network