krr1 (krr1)


Basic Information

Item Value
gene id krr1
gene name krr1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8916576 ~ 8926508 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674288.1
CTGAAGGGTCGCTGTGAGTCTCACTGCGTTCAAACACGCAGCAGCGCTAAAggaagcagcagaagaagaatcAGCAGTAATGGCGGCGCCCGCAGAGGgcagcgtgagagagagaggcgatCAGAAACTCAACAGAAACAGAACCAGAGCCAACCAGCAGCCCTCCGATGATTTGGAGCTGTTGACTGTTCCGGATGGATGGAAGGAGCCGGAGTTTACGTGGGCGGATAACCCCCGGGGGCTGCTGGAGGAGAGCAGCTTCGCAACCCTCTTCCCCAAATACCGCGAGGCGTATCTGAAGGAGTGCTGGCCGCTGGTGCAGAAAGCTCTCGGAGAGATTTTTATAAATGCTTCACTGGATCTGATTGAGGGCAGCATCACTGTCAGCACCACTAAAAAGACCTTTGACCCGTACGCCATCCTCAGAGCGCGGGACCTCATCAAACTGCTGGCCAGAAGCGTCCCGTTCGAGCAGGCTGTGAGGATTCTGCAGGACGACATGGCGTGCGATATAATAAAGATCGGGACACTGGTGCGGAACAGAGAACGCTTTGTGAAGCGCAGACAGAGACTGATTGGACCTAAAGGCTCTACGCTAAAGGCACTGGAGCTGCTAAGCAACTGCTATGTACTGGTTCAGGGAAACACAGTCTCTGTACTGGGACCCCACAGCGGCCTGAAGGagGTGAGGAAGGTGGTTCTGGACACGATGAAGAATATTCACCCCATTTACAACATCAAGaCCCTGATGATAAAGCGAGAGTTGGCGAGTGATCCTGAGCTGCGCTCTCAGAGCTGGGACAGATTTCTCCCCAAGTTCAAACACAAAAGTCTGGCCAAACGGCAAAAACCCAAAAAGAAGAAGGTTAAGAAGGAGTACACTCCATTCCCTCCACCCCAACCTGAGAGCAAGGTTGATCGTGAGTTGGCGAGTGGAGAGTTCTTTCTGCGGGAGAgcgagaagaggaggaggaaactGAATGAAATCAAGGTGAAGCAGGCTGAAGCTCTGAGCCGAAAACAGGATGAGaggaaaaaagcatttattcCTCCCAGAGAGAAACCGGCCACCAAGAAAACGCCCAAAGCTCCTGCTGAAGAGAAACTGGACATCCAGGCCATTAAGGATAAAGTAAAGAAGGCTAAGAATAAGAAGCTTGGAGCTCCTCCCCAACTGAGCTCTGTGACGCCACCTTTTGACcttgagaagaagaagaaaataacgAAGAGTAAAAGCTGATGCATCTCTGCAGGATGGACTGTTGTTTCTCTAATGGACAAATATGGCAATGGTGGAAAATCCAGGTCCTGAAAGCAAAAATCCATCTATGGACCTGGAGTAACCAACTCTATATTTTGTATGTTATTGATAgatgtttgttgttgttgttgtttttttttttttttttttatgtaaatgttctgatgtgtgttgtgctggtacaagttgattagacacagcagtgttgctggagttttttaacacctcagtaaatatatttatccTTTCCTGTCTTGTGAGCATTGATGAGGGACTAGATGAAAagcaacacaaactgtgcagtcccagattcagagcttctgtctctgactacaTCCACAAGGTGGAGCTACAGGTACTGCTGTGTCAGATCCACTCATGTAACACCACAGCACACCAGCATCATGCTAATCAGTGTTACTGCACCCAATATGCACCCAAATAATTATAGCTGCTCTTTGGTGATCTATCCTGTGGAGTCACGAGGGTCCTAAACATACAGGACTAGAGTCTGTTATAGAACTCCTATATgatcctatatgatcagtggatcTGATAAGTTTTATAATGGGTGCAGTAACacagaggtggtcataatgtcaTGAATGTCTGGTGTGTATACATGTCCGTTGTACTGTTCAGATGCTGGCTGTAATCTGAAGTGGTGGAGATTAAAGCTGAAGTGGTTTGTttagtttga

Function

symbol description
krr1 Predicted to enable RNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human KRR1 (KRR1 small subunit processome component homolog).

NR:

description
PREDICTED: KRR1 small subunit processome component homolog

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674288.1 True 1961 mRNA 0.47 10 8916576 8926508

Neighbor

gene id symbol gene type direction distance location
LOC111193444 NA coding upstream 20979 8862740 ~ 8895597 (+)
LOC103033147 phlda1 coding upstream 95387 8818913 ~ 8821189 (+)
nap1l1 nap1l1,LOC106576514,LOC106609764 coding upstream 101436 8799265 ~ 8815140 (+)
osbpl8 osbpl8,LOC107555879 coding upstream 120796 8758128 ~ 8795780 (+)
LOC103030255 dtnbp1,LOC107593648 coding upstream 182686 8723036 ~ 8733890 (+)
ccdc107 LOC107555866 coding downstream 97879 9024387 ~ 9034301 (+)
LOC103035505 LOC108411721,LOC107658752 coding downstream 121357 9047865 ~ 9080238 (+)
cpsf6 cpsf6,LOC107729149 coding downstream 253277 9179785 ~ 9195720 (+)
LOC103042523 far1,LOC107590516,LOC103366393 coding downstream 288344 9214852 ~ 9268400 (+)
LOC111193395 NA coding downstream 436560 9363068 ~ 9365903 (+)
G98462 NA non-coding upstream 6291 8910008 ~ 8910285 (+)
G98460 NA non-coding upstream 8892 8907264 ~ 8907684 (+)
G98457 NA non-coding upstream 22296 8894054 ~ 8894280 (+)
LOC111193443 NA non-coding upstream 23314 8862875 ~ 8893262 (+)
LOC111193445 NA non-coding upstream 28944 8886442 ~ 8887632 (+)
G98483 NA non-coding downstream 36805 8963313 ~ 8965169 (+)
G98494 NA non-coding downstream 136661 9063169 ~ 9153581 (+)
G98496 NA non-coding downstream 157081 9083589 ~ 9086583 (+)
G98497 NA non-coding downstream 157261 9083769 ~ 9084299 (+)
G98498 NA non-coding downstream 160125 9086633 ~ 9096883 (+)
G97931 NA other upstream 1785767 7127804 ~ 7130809 (+)
G97926 NA other upstream 1846447 7068688 ~ 7070129 (+)
apoc1 NA other upstream 1850547 7062132 ~ 7066029 (+)
adar adar,LOC107723500 other upstream 2234885 6654350 ~ 6681691 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other upstream 2351573 6532516 ~ 6565003 (+)
G98636 NA other downstream 385898 9312406 ~ 9312803 (+)
G98840 NA other downstream 1069696 9996204 ~ 10002046 (+)
G98845 NA other downstream 1133925 10060433 ~ 10069002 (+)
G98934 grik5,LOC107551699 other downstream 1246045 10172553 ~ 10178459 (+)
G98967 NA other downstream 1567283 10493791 ~ 10498518 (+)

Expression


Co-expression Network