zfat (zfat)


Basic Information

Item Value
gene id zfat
gene name zfat
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11112055 ~ 11127909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674332.1
GCGCTCCACGCGCAGAGACCCCTCAAGCCTGCGCAGCTCCGAGAAGGAGATTCAACCCGCCATACGTGATGTCGCAGATTCGCCAGAAGTTACTGCAGTTAcagtaattttaatataatcagGCTGTTTAATAATGATGTTTTCAGCTCAGAGCGGGGATTAGCGGCGGTTTCTGCAGCGCGGGGGCCGCGGATTTATTTCTGAAGCATGGACTGTGCGCGAGCAGatGGTCCTTCGGTCTTCATGTGCAAAATATGCAACCTGTTCTCACCTAATAAGTCGCTGCTCCTGTCTCACGTCCTTGAGAACCACACCAAGGAGGGGGATGATGCTGAGGAAGTCATTATTCCACTCAAGCCATTACAGTCACCACAAGCACAACCTGCAGACGGTGTTGTGAAAAGGAAACGCGGCAGACCAAAAGGTTCAACCAAGAAAGTCCAAGCAGACAAAGTCAGGACGAATAAAGCTTCCAGTCAGCCAAAGAAAGAGATGCCGGCCGCTCAGCCGGAATCTGCGGCCGAACAGCAAAACGAAGATGACACTGGTTTGGAGTGCAAGAAATGCCATCGCAAGTTCAGCAACAAACGACAAATTTCCAAACACATCTGTTTTGCAGGACTTAAAGAAGCTGCGGACGAGGAGGAGAACCACGGTCACAATCCCGATGCTGGTAAGAAAGATGATGGAGAAGATGACGTAAGATCTACACCAAAGAAGGCGAGAACAATGAGAACAGATAAGGCTTCTAACGTAAAAGACCCGGAGTCGACAAACTGCACCAAAAACCCCATCGTCAGTGTTGTCCTTGCAGCTCATGAAGCCATTCCTGGTGCCACAAAAATAGTTCCAATAGAGGCTGCACCAGCCGAGGCAGTTATCCCACCAGAGACCACCGCCAGCTCCCAAGTACCAGAACCGAAGAAGGGTTATCAGGAATACGCCATCCAGCAAGCTGCTTACGAGGTTCCTCTCAAATCTAACAGGTTAGGTCAAACACAGCTGAAAATCTTCACCTGTGAATACTGCAACAAGGTCTTCAAGTTCAAGCACTCGCTCCAAGCCCACTTACGGATTCACACCAACGagaagccatttaaatgccccCAGTGCGACTACGCCAGCACCATCAAGGCCAACCTCAGCGTTCACATGAGGAAGCACACTGGAGAGAAGTTCAGCTGCGAGCACTGCTCCTTCAGCTGCCTCAGCAAGGGCCACCTCAAGGTCCACGTGGAGCGGGTGCACAAGAAGGTGAAGCAGTACTGCCGCTTCTGCAAGAAGAAGTACTCGGATGTGAAGAACTTGCTGAAGCACATTCGCGAGAGTCACGACCTGGAAGATGAGAAGGTTAAAGAGTCCTATGATGAGTACAGACTACAGACCAGAGAGGGCAAGAGGCAGCTTCTGTACGACTGTCAGATATGCGACCGCAAGTTCAAGAACGAGCTGGACCGCGACCGTCACCTCATGGTGCACGGCAGCAAGAGACCGTTCGGCTGCGAGCTGTGCGACCACGGCTCCACCAAGTTCCAGGCTCTGCAGGCTCATATCCGGAAGCATCCCTTCGTCTATGTGTGCGCCATCTGCCTGCAGAGGTTTGTCAGTTCGGTGCGCCTCAAGTCCCACTTCCAGCAGTCCCACCCTGAAGTGGACGAGACCACGGCGTTCTCAGATTCAATCAAGAACAGTTTCTGCCTGCTGAAACCTGGAGACGACATCCAGCAGGACATTGTAAAACAGGAGGAGCTGGACATTACGAAAGAGTTATCTCTCCTTAACGTTCAAGAGGTGCTCATCACGGACgtagaagaagaacaagaagacgACGCTGAATGTCCTGAAGGCTTACCTACAGAAATTGCAGCCGACACATTAGAACAGGAGACCCAGGAAGATGTAGCATCAACAGACATTGACACCAGTTGCCAAATAATTGAGACCGTTGAAACCCAGACACATGAAAATCAACCCCAAGGCAGTTTACCAAACATGGACTCCAGTGTAACTCCAGGGTTTGACAATCCAAATGAAGATGCAGAAAATGTAGCATTGACTTCGCATACTCCCATAACTGAAACTCAAACAACATCAACCCAGCAGATGTTGTCTACAGACAGTGGTGACGCACCAGTCGCTCAAAATGAGATAGAAGAAACCCACGTCACTCCGAGCAACACTGCCTCTAGTGGTGCGGAGGACTTGTTGGCCACCACACATCAAGAGGAAAAATCAGCGTTCATGCAGATTTTAGACCAAATGCAAAAAAGGCAGCTAAACATGGACATCTTTGAGAGGATACGCAAGATTTACGGAGACCTGGAGTGCGAATACTGTGGTAAGCTCTTCTGGTATCAGGTGCACTATAACATGCACGTGCGAACACACACTCGTGagcacctgcactactgctccCAGTGCAGCTACTCCTCCATCACCAAAAACTGTTTGAAGCGGCATGTCAtccaaaaacacagcaacatcCTCCTCAAGTGTCCTTTAGAAGGGTGTGAGTACTGCACTCCTGACAAGTACAAGCTGCAGTCCCAcgtcaaaacacacacagaaactGTTAAAAACCAGTTCATTTGTCCCGTCTGTAAAGACTCATTTCCAGAGGACAAACTTAGATATCATATCAAAATAAATCATCCAGATACATCATGGAGTACTATCTCAGAGGCGCTGGGGATACGTGTTCATGTAAAAGGAGTAATAGGGAAACGAGCCTCTAAATGTCCGTACTGTGACTGCTTCTTCACACGGAATGGAACAGACATGCAACAGCACATATGGGCTCATGAAGGCGTGAAGCCCTTCAAGTGTCCGATCTGTGACTACGCCTCCCGCAGTAAAAGCAACCTGAAGGCACACATGAACCGCCACAATACAGAGAAGACCCACCTCTGTGATTTATGTGGGAAGAAGTTCAAGTCTAAATGCACTCTTAAGAGCCACAAGCTAATGCACTCCGCAGATGGTAAGCAGTTCAAATGCACTGAGTGTGATTTCACTGCAGCACAGAAGCCACACCTCCTCCGCCACATGGAACAACACGCCTCTTTTAAGCCGTTCCGTTGCGCACACTGCCACTATTCCTGCAACATCCCAGGCTCTCTTAAAAgacattataataaaaagcatcCCGGTGAACAGTACTGCAATGCAGGTCCTGGAACAGCATCATCTGAAACTGTGATGGAGCAAGgtGGAGTGAAGTGCCCTGTCTGTAACTATGTTTATGGCACTAAATGGGAAATGAACAGACACCTGAAGAGCAAACACGGCCTCAAAGTGGTGGAGAACAGCAGTCTCGGGCTGAACCAGTGGGAGGTGGTGGAGTCGGTGGAGGAGCCGAGCGCGCAGTATCTTCAGATTGCTGAGACGGAGGATGCTCAGGGAACAGAGGATGCGGTGTCGGCACTGCAGAACCTCCGCTTTAACACACAGAACGGTGTTGTGTCCGCAACGACAGCAGACAGACTGGACCCAGTGTCCGTTAATATTCTTCAGCAAATAATCGAGCTGGGCACAGAGAACCCCGATGCGACCGTGGCTTCTGTGGTAGCCATGGCTCCTGGCACAGTCACTGTAGTGGAGCAGGTGACGGAGGAGGAGGACCAGGCTGGCCACGCCATGATGATCCAGGATGCCATGCAGCAGGCCTCAGTGGGCTTGGGAGAAGAGCACCACCTGGTGGTGTCCTCAGACGACGTGGAGGGCATAAAGACGGTGACTGTGTACACGCAGGGGGACGACGCCTCTCAGTTCATAGTCTACGTTCAGGAGGCCGTGCAGACTGAAGAGACCACCACAGAAGTGGTCTGAACGTCCTCAGGAACGTGGTGAAATAATGTACGCCTGGAGAATCATTCTGATTTAAGCAGTTTCCAGTCTCAAGCGGACGGAGTTACAGGAATGGTTTGgctgaaaatgaaatctacGTAGGTTTACTTTTATTCCACATGGTGtcaatcagccaatcagtgcactaggaggaaagcgcagcgactcagttccgatacatcagctcacagatgcagcctcg

Function

symbol description
zfat Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

NR:

description
PREDICTED: zinc finger protein ZFAT isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674332.1 True 4048 mRNA 0.50 17 11112055 11127909

Neighbor

gene id symbol gene type direction distance location
LOC103032145 LOC108438260 coding upstream 10956 11079535 ~ 11101099 (+)
rabac1 rabac1,LOC107551691,LOC107582040 coding upstream 333932 10771498 ~ 10778123 (+)
gsk3a gsk3a,gsk3ab,LOC103362704,LOC107724158,LOC108412552 coding upstream 623486 10469175 ~ 10488569 (+)
cic cic coding upstream 660664 10379229 ~ 10451391 (+)
pafah1b3 pafah1b3,LOC108432331,LOC107671211,LOC107755833,LOC108266541 coding upstream 1064084 10041913 ~ 10047971 (+)
LOC103022365 jarid2a,LOC108443719,LOC108265176,LOC107657689,LOC107593646,LOC107714830,LOC107595576 coding downstream 59240 11187149 ~ 11281470 (+)
dap3 dap3 coding downstream 281549 11409458 ~ 11420340 (+)
gba gba coding downstream 293625 11421534 ~ 11443382 (+)
LOC103038511 LOC103038511 coding downstream 337256 11465165 ~ 11470103 (+)
LOC103045287 si:ch211-257p13.3,LOC108412665,LOC108271642,LOC107685558,LOC107596636 coding downstream 348635 11476544 ~ 11512742 (+)
G99105 NA non-coding upstream 8390 11059872 ~ 11103665 (+)
LOC111193451 NA non-coding upstream 119652 10988307 ~ 10992403 (+)
LOC111193452 NA non-coding upstream 138943 10971936 ~ 10973112 (+)
G99079 NA non-coding upstream 187661 10922030 ~ 10924394 (+)
G99083 NA non-coding upstream 250817 10859208 ~ 10861238 (+)
G99114 NA non-coding downstream 6781 11134690 ~ 11141069 (+)
G99115 NA non-coding downstream 17148 11145057 ~ 11155000 (+)
G99119 NA non-coding downstream 38520 11166429 ~ 11175989 (+)
G99244 NA non-coding downstream 233332 11361241 ~ 11364273 (+)
G99255 NA non-coding downstream 276872 11404781 ~ 11405210 (+)
abhd16a abhd16a,LOC107717442,LOC107723554,LOC107582042 other upstream 64365 11028822 ~ 11047690 (+)
LOC103033199 NA other upstream 84631 10999925 ~ 11027424 (+)
G98967 NA other upstream 613537 10493791 ~ 10498518 (+)
G98934 grik5,LOC107551699 other upstream 933596 10172553 ~ 10178459 (+)
G98845 NA other upstream 1043053 10060433 ~ 10069002 (+)
LOC111188200 rusc1 other downstream 166183 11294092 ~ 11302885 (+)

Expression


Co-expression Network