dap3 (dap3)


Basic Information

Item Value
gene id dap3
gene name dap3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11409458 ~ 11420340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674343.1
cacacacacacacacacacacagtgtgactCTGACTGATTGGTGCTGTTCTGTTCAGGTTGTGCAGGTGCGGTCTCTCCACGGCAGCAGTAATGTCCAGCAAGTGGAAACGGCTGCTGTGGCGGCAGAATCAGATCCAGTGTCCAGTCAGTTTTCAGTATTCAGGACGTCAGAGAATGATCCGGCGTGTCACACAGACCTGCACGCTGGTCAGTATTACACTCTCCCTACCGCACAGCTCCGCACACTGTTCCCCCACGGACTACCCTATCGCTTCCAGATGCAGATAAAGACGTTTAACGAGGCGTGTGTGATGGTGAGGCAGCCTGCGCTGGAGCTCATCTCTTACCTGAAGAAAGCAGACTACAGCAGACCGGCCTTGCGCTACATACTCTATGGAGAGACGGGCTGTGGGAAGACTATGTCTCTGTGCCACGCTCTTCATTTCTGCGCCACTCAGGGCTGGATGGTCCTGCACATACCAGATGctcatttGTGGGTGAAAAACTGCCGGGAGCTGCTGCCCTCATCGTCCCGCCCGGGTCGCCTTGACCAGCCGCTCCAAGCTTCCCTGTGGCTGAAGAATTTTAAAACCACCAATGATCGTTTCCTCTCAAAGATAAAGACGACGCAGCGTTATGTGTGGACGAAGAGGGAGACCACAGAGGAGGGACGGCCTTTAGGAGAGCTGGTAGACCAGGGTGTGGCCCGTGTGAAAAGCAGCAGCGACGTGGTGGGGGCTCTGCTGAGAGAGCTGCGGCTGCAGGCAGGGGGCGCCGCAGAGGGAGCCTTCAGACTGGCTGTAGCTGTAGATGGAGTCAACGCTCTGTGGGGAAGGACAACTTTAAAAAAGGAGGACAAGAGTGAGGTTTTGCCAGAGGAGTTAACACTTGTCCATAACCTGAGAAAAATGCTGAGAAATGACTGGagtggGGGAGCCATTCTCACAACCCTGTCCCATACTGGCTCCCTTTACAAACCTCGCTCAGCCTACCTGCCCATGGAGCTGCTGGGAGAggaGGGGTTTGATACTATGGACCCCTTTGTGCCAGTCCCTGTTTCTTCCTACACTGAAAAGGAGTTTGAGAGCTGTTACCTGTACTACATGGACCGACACTGGCTCCAGCATCCACACAGTCAAACAGAGGAGGGCAAGAAAGAACTCATCTTCCTCAGCAACAGAAACCCGTCCATTCTGGAAAGACTGTGCGCCACCCTATAAtgaatatctctctctctctctctcctctctctctctctctctctctcttgttctcttgtGTGTAAAATTATGTGTAACAGACATTATAtgctctttaataataaaaatctgccCTGTGGTAAAAAA

Function

symbol description
dap3 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674343.1 True 1347 mRNA 0.52 11 11409458 11420340

Neighbor

gene id symbol gene type direction distance location
LOC103022365 jarid2a,LOC108443719,LOC108265176,LOC107657689,LOC107593646,LOC107714830,LOC107595576 coding upstream 127988 11187149 ~ 11281470 (+)
zfat zfat coding upstream 281549 11112055 ~ 11127909 (+)
LOC103032145 LOC108438260 coding upstream 308359 11079535 ~ 11101099 (+)
rabac1 rabac1,LOC107551691,LOC107582040 coding upstream 631335 10771498 ~ 10778123 (+)
gsk3a gsk3a,gsk3ab,LOC103362704,LOC107724158,LOC108412552 coding upstream 920889 10469175 ~ 10488569 (+)
gba gba coding downstream 1194 11421534 ~ 11443382 (+)
LOC103038511 LOC103038511 coding downstream 44825 11465165 ~ 11470103 (+)
LOC103045287 si:ch211-257p13.3,LOC108412665,LOC108271642,LOC107685558,LOC107596636 coding downstream 56204 11476544 ~ 11512742 (+)
nbeal2 nbeal2,LOC107596634 coding downstream 122883 11543223 ~ 11650498 (+)
G99255 NA non-coding upstream 4248 11404781 ~ 11405210 (+)
G99244 NA non-coding upstream 45185 11361241 ~ 11364273 (+)
G99119 NA non-coding upstream 233469 11166429 ~ 11175989 (+)
G99115 NA non-coding upstream 254458 11145057 ~ 11155000 (+)
G99114 NA non-coding upstream 268389 11134690 ~ 11141069 (+)
G99269 NA non-coding downstream 88923 11509263 ~ 11510375 (+)
LOC111188200 rusc1 other upstream 106573 11294092 ~ 11302885 (+)
abhd16a abhd16a,LOC107717442,LOC107723554,LOC107582042 other upstream 361768 11028822 ~ 11047690 (+)
LOC103033199 NA other upstream 382034 10999925 ~ 11027424 (+)
G98967 NA other upstream 910940 10493791 ~ 10498518 (+)
G98934 grik5,LOC107551699 other upstream 1230999 10172553 ~ 10178459 (+)

Expression


Co-expression Network