LOC103043678


Basic Information

Item Value
gene id LOC103043678
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 146111 ~ 151431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650508.1
ggattacttgtgtatgaactctggactgtctctcgtttatgTGCATCAGAGTGGAGTCTGTGGGGGACTGAAGGAGTGGGTTCTACAGCTGTTCTCTAGACTAAATGAAAATGCTGCTGATCTGTGGAGTTCTGTTGATGTTCACAGGATCTGCTGTGGGTCTGATTACTGTAGGTCCTCAGTGCAGATCTGATCAGACTTGTGTGTTTTATGAAGCTCTTGAACATCCAATGCACCTGCAGCTGCCTTCTGAGTCTGAATTAACTCTAAAGAAGATTGATGAACATGTTtctcaggtcattttgaaatgtaaaaaacaaaagatcCTAATACACTTAAACTATCCAAGATGGCAGTTTGTTTCAGAACACAGAACCATGATAATAACCAGAGCAGAGAAGAACGATTCAGGAAGATACAGATTAGAGACCTTCGATTCAGAAGGCACTAACAAAGGTGTTTATGATTTCCATCTGACCATAGAAGCTGTGGTGTCGTCAGTGGAAGTGAAATACAGCTGCTTGTCCGGCTTAAACAGGCGTTTGTTCTGTTCGTCTGATGGAGATCAGATCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650508.1 True 575 lncRNA 0.42 4 146111 151431

Neighbor

gene id symbol gene type direction distance location
cep162 cep162 coding downstream 12240 163671 ~ 224795 (+)
LOC103039326 LOC108429160 coding downstream 298320 449751 ~ 460182 (+)
LOC103038500 c1ql1,LOC108429188,LOC107677187,LOC107667184,LOC107554477,LOC107599703,LOC107717612 coding downstream 329728 481159 ~ 495383 (+)
crhr1 crhr1,LOC108429163,LOC108273210,LOC107662410,LOC105890724,LOC108413653 coding downstream 445555 596986 ~ 636430 (+)
LOC103035972 LOC108269775,LOC100333227,LOC107747872,LOC100704930 coding downstream 501193 652624 ~ 682305 (+)
G95940 NA non-coding upstream 14734 130793 ~ 131377 (+)
G95937 NA non-coding upstream 44307 101600 ~ 101804 (+)
G95943 NA non-coding downstream 1070 152501 ~ 153634 (+)
G95948 NA non-coding downstream 73992 225423 ~ 226925 (+)
G95950 NA non-coding downstream 80076 231507 ~ 233197 (+)
G95953 NA non-coding downstream 101462 252893 ~ 256290 (+)
G95961 NA non-coding downstream 118682 270113 ~ 353531 (+)
LOC103040575 ube2i,LOC107677193 other downstream 647793 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 3237620 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 3713559 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4814039 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 5656137 5807568 ~ 5850530 (+)

Expression


Co-expression Network