LOC111193408


Basic Information

Item Value
gene id LOC111193408
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 943873 ~ 948585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650511.1
accttaaagtctattctgtaacatactggtatccagtgtagggatttaaggatgggggtGATGTGCTCTCTTCTTTTACTCCTAGTcagaactctggctgctgaattctgaatcagctgaagctgtttgatggtcttttttgggagtcCAGTTAGGAGTCCATTACAgtaATAAATCCTACTG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650511.1 True 183 ncRNA 0.42 3 943873 948585

Neighbor

gene id symbol gene type direction distance location
cog7 cog7,LOC107717425,LOC107747870 coding upstream 79285 840868 ~ 864588 (+)
LOC111193407 LOC108429197,LOC107677189,LOC107599708,LOC107747868,LOC107717626,LOC107554503,LOC107719174,LOC107703376 coding upstream 148330 777829 ~ 795543 (+)
LOC103033547 pdpk1b,LOC108429196,LOC108264442,LOC107747865,LOC107667172,LOC107677174 coding upstream 167385 753085 ~ 776488 (+)
tsr3 tsr3,LOC107717598,LOC107667183,LOC107747895,LOC107556684,LOC107677200 coding upstream 193508 744385 ~ 750365 (+)
LOC103035039 NA coding upstream 212438 715242 ~ 731435 (+)
nlrc3 nlrc3 coding downstream 71549 1020134 ~ 1209397 (+)
wdr90 wdr90,LOC107677127 coding downstream 275591 1224176 ~ 1271502 (+)
rhot2 rhot2,LOC107677299,LOC107556678 coding downstream 329199 1277784 ~ 1302779 (+)
rhbdl1 rhbdl1,LOC107747857,LOC102790881 coding downstream 373529 1322114 ~ 1415632 (+)
wdr24 wdr24,LOC107747855,LOC107717799,LOC107667227 coding downstream 491244 1439829 ~ 1455488 (+)
G96132 NA non-coding upstream 107771 835482 ~ 836102 (+)
G96124 NA non-coding upstream 134343 809321 ~ 809530 (+)
G96116 gnptg non-coding upstream 200134 736741 ~ 743739 (+)
G96073 NA non-coding upstream 357761 585905 ~ 586112 (+)
G96061 NA non-coding upstream 365042 578494 ~ 578831 (+)
G96281 NA non-coding downstream 392976 1341561 ~ 1391532 (+)
G96282 NA non-coding downstream 395452 1344037 ~ 1344448 (+)
G96286 NA non-coding downstream 416199 1364784 ~ 1456887 (+)
G96273 NA non-coding downstream 433840 1382425 ~ 1421881 (+)
G96289 NA non-coding downstream 443423 1392008 ~ 1392358 (+)
LOC103040575 ube2i,LOC107677193 other upstream 135299 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 2440466 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 2916405 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 4016885 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 4858983 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 5331737 6280322 ~ 6382717 (+)

Expression


Co-expression Network