LOC111193411


Basic Information

Item Value
gene id LOC111193411
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2224582 ~ 2227412 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650513.1
cagctctggaaaaaaaaaaaacaagacaccactcaaaacattaaaaatgtggGCCAGCGCATGTGCAGTGCAGTGCAGAAGCCTTCAGCTCTTCTAAGAGCAGAGTTGAAAGCTTTCAGAGCATCCACTTGAACAGAGACAGGAAacggaagaaagaaaaagagaaacttGTGGGGAAGAATGAAGATATTGAAGATATTGAATCTCACAAGGTGCATCTCCATTCAGCTTTGTCTGTTTCTCAGACTTGGCCTTTGCAGTGGGACTCACCAGGGAAAATGATGCGATAGAAACAAGGCTGATGTTACCAGTCACTGTCTCCTGGAAGAGAAATCAAAATCAGCTGTACAGGCATGTTTGGGATATTACAATACAAATGTGGTATTATAATAATGTAGGTGTTATAACTGTGTTGGGTATGGAGTTAACTAGAGCTCTACTGGTTGGCACTGGAATCCTCTTCCACTCCTGCATGATGATATCATTGAGCTGGTGGATGTTGGAGACCTTGCACTCCTCCACCTTCCATGTGAGGATGCCCCAGAGGTGATCAATTGGGTTTAAGTCTGAAGACATAGTTGGCTAGTCCATCACCCGTATTTTTAGCTGATTCTCAGCCCAAATATGCTTGAATATAGCTGATCCAGAGAGCTGGTCAGATATTATGATCCATATTTTAATTACCTTTAGCATTTGAAAAACCATAAATCATTATTAAGTTGTAGCTGTGTTTACTACACaacctctgtctgtctgtcaggcTGCCTTTGTATGTGTTGTAAGTCTGGTTTGGTTGGCCTCCCTCCCATCTCTGTCTCCCTCCCACATCCCTGTCTATGTCCATatgtctctctgcctctctctgtctctctctctctctgtgggaaGAGGATGTAGTTGTCTCCACAGACAAAGTGTGAACTCATTCTGTCACTTCAGCTACCAGTGAGCAGGTACTTGTCAAATGGCCTTACCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650513.1 True 978 lncRNA 0.43 3 2224582 2227412

Neighbor

gene id symbol gene type direction distance location
LOC103036307 LOC106588695 coding upstream 56891 2151917 ~ 2167691 (+)
ice1 NA coding upstream 75844 2126283 ~ 2148738 (+)
prpf3 prpf3 coding upstream 102872 2110877 ~ 2121710 (+)
LOC103032920 NA coding upstream 139184 2074608 ~ 2085398 (+)
nov NA coding upstream 269516 1950534 ~ 1955066 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding downstream 14758 2242170 ~ 2495068 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding downstream 508717 2736129 ~ 3006374 (+)
cobl NA coding downstream 919957 3147369 ~ 3272603 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding downstream 1056615 3284027 ~ 3372686 (+)
LOC103035455 LOC103035455,LOC108429251 coding downstream 1426388 3653800 ~ 3741264 (+)
G96541 NA non-coding upstream 148628 2075386 ~ 2075954 (+)
G96520 taf2 non-coding upstream 210295 2011391 ~ 2014287 (+)
G96517 taf2,LOC106594256 non-coding upstream 220971 1997871 ~ 2003611 (+)
G96460 NA non-coding upstream 366687 1810389 ~ 1857895 (+)
G96291 NA non-coding upstream 795365 1426258 ~ 1429217 (+)
G96582 NA non-coding downstream 34627 2262039 ~ 2265095 (+)
G96601 NA non-coding downstream 226340 2453752 ~ 2454050 (+)
G96604 NA non-coding downstream 267957 2495369 ~ 2495929 (+)
G96609 NA non-coding downstream 273745 2501157 ~ 2503293 (+)
G96614 NA non-coding downstream 290760 2518172 ~ 2586270 (+)
LOC103040575 ube2i,LOC107677193 other upstream 1416008 799224 ~ 808574 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other downstream 1161639 3389051 ~ 3438726 (+)
LOC111193421 mboat1 other downstream 1637578 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 2738058 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 3580156 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 4052910 6280322 ~ 6382717 (+)

Expression


Co-expression Network