LOC111193420


Basic Information

Item Value
gene id LOC111193420
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3751492 ~ 3752697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650518.1
aacgaatctggagctgcgaatatcaaaccaacttcagcctcgtttTGTTTTTCAGGTGTCGAAACCGGTGTGGGTATACTGACACCCCGCGGTCAGACATGGAGTTTTGGCGGAGTGAAGACTATCTCCTGGAGGGGGCTTCCGGTGGGTCAGGAGACCAGTTCATTCTCCTGCCTTTTTTGCGGCACTGAGGAGCTGAGGGACTCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGATGGAGCTCAGGCGGGTTCAGCACGAGTTCCTCGAGGGGAAGTTGAGGGCCCTCATCGAGAAGCTTTCCTCGCCCAGGCGGCATGGTGGGAGACTCCTGGTGCCGGTAATGGAGGCAGCCCCCGCCCACAGGCTTGACTCTACTACGCCTGATGTTCCAGGTCCAGTTGCACAGGCTTTGTGTGACTCGGACCTCGGAATGTCAAAGAGAAGATGTTGGAGCCACCTCCTAAAACACAGATCAGATTTCAGTGTTATTTAAAGCAGTACATATAAGAAGCTGTGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650518.1 True 531 lncRNA 0.55 5 3751492 3752697

Neighbor

gene id symbol gene type direction distance location
LOC103035455 LOC103035455,LOC108429251 coding upstream 10228 3653800 ~ 3741264 (+)
grb10 grb10,LOC103031323,LOC107551212,LOC107751877,LOC107746967 coding upstream 378806 3284027 ~ 3372686 (+)
cobl NA coding upstream 478889 3147369 ~ 3272603 (+)
LOC103037869 triob,LOC108429234,LOC107746974 coding upstream 745118 2736129 ~ 3006374 (+)
LOC103036916 adcy2a,LOC108429235,LOC108272199,LOC103367001 coding upstream 1256424 2242170 ~ 2495068 (+)
LOC103037205 tmem65,LOC108429253,LOC108271490,LOC106922370,LOC103135153,LOC106953768 coding downstream 7248 3759945 ~ 3859872 (+)
e2f3 e2f3,LOC108429255 coding downstream 148992 3901689 ~ 3915719 (+)
LOC103038805 NA coding downstream 170964 3923661 ~ 3925572 (+)
tmem158 tmem158 coding downstream 409177 4161874 ~ 4164337 (+)
LOC103035111 NA coding downstream 417749 4170446 ~ 4194866 (+)
G96915 NA non-coding upstream 22919 3727932 ~ 3728573 (+)
G96912 NA non-coding upstream 35091 3713518 ~ 3716401 (+)
G96888 NA non-coding upstream 168727 3533546 ~ 3582765 (+)
G96861 NA non-coding upstream 243801 3502838 ~ 3507691 (+)
G96761 NA non-coding upstream 628085 3122855 ~ 3123407 (+)
LOC111193419 NA non-coding downstream 475 3753172 ~ 3754770 (+)
G97000 NA non-coding downstream 180114 3932811 ~ 4195776 (+)
G97029 NA non-coding downstream 343437 4096134 ~ 4165899 (+)
G97035 LOC103034794,LOC108437355,LOC104937918 non-coding downstream 443251 4195948 ~ 4197937 (+)
G97038 NA non-coding downstream 473243 4225940 ~ 4287454 (+)
ddc ddc,LOC107551213,LOC107601670,LOC107746968,LOC107751878 other upstream 312766 3389051 ~ 3438726 (+)
LOC103040575 ube2i,LOC107677193 other upstream 2942918 799224 ~ 808574 (+)
LOC111193421 mboat1 other downstream 112293 3864990 ~ 3898919 (+)
ndufaf6 ndufaf6 other downstream 1212773 4965470 ~ 4980947 (+)
c11h1orf43 aqp10a,cunh1orf43,c1h1orf43,LOC108429989,LOC108265981,LOC107714675,LOC107673770,LOC107596410,LOC107723578,LOC107582062,LOC107714677,LOC107677017 other downstream 2054871 5807568 ~ 5850530 (+)
efna3 efna3b,LOC108429914,LOC107699557,LOC108254910,LOC107723569,LOC107677021 other downstream 2527625 6280322 ~ 6382717 (+)
G97678 s10a1,LOC108429935,LOC106570100,LOC105901452,LOC105027143,LOC108437929,LOC106588175 other downstream 2779819 6532516 ~ 6565003 (+)

Expression


Co-expression Network