CI01000012_00176813_00177864


Basic Information

Item Value
gene id CI01000012_00176813_00177864
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 176344 ~ 177926 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_00176813_00177864.mRNA
ACCTCTCAACGGAAGAACTAGAAACTGCTGAATTGGATATTATTAGACTCTCACAAGAAAAGATGTTTCCTGATGAGCTTGCTAGTCTGAAAAGAGGATGCCAACAGATGGCAGATTTACCATCAGAAAGAGTCACTCCGAATGAACCTCCTTTTACCCGGGTTGGGGTAGAATATTTTGGACCTTTTGAGGTAAAGAGCAGAAGAAGCATTGTGAAAAGACGTGGACAAGTCAAGGAGCTTCGATCTGATAATGGAAAGAACTTTGTTGGAGCAGAACGTGAACTAAGAGTTGCCATTAAGGAATGGAATCAGTGTAAAATCAATGATGTCCTTCTTCAGAAAGGAATTAAATGGACATTTAACCCCCCAACTGGATCACATTATGGAGGGGCATGGGAGAGGTTAATTAGATCTGTGCGGAAAGTTCTGAATTCTATCTTAAAGATGCAGAATCTAGATGAAGAAGGGCTACACACCGTTTTTTGCGAAGTGGAAACTATTATTAATGGTCGTCCAATCACCAAGGCATCCACAGACCCAAGTGACTTAGAAGTATTAACACCAAACCACCTGTTGCTTTTGAGAACTTCACCATCATTACCACCTGGAGAATTCAAAAAGGATGATGTTTATGCTCGTAAACGATGGAAACAGGTCCAGTACATGTCAGATTTGTTCTGGAAGAGTCATTTTCTTTGACTTTTGACATTTGACATTGACCTATGAACTTGACAGAGAGAAACTGAAAAGAATACTTTACTGAACACTTTTTTTTGCATCACTTTTCAAGATTTGTTGCCTTTTTTTTGGAAGAAGAAATGTATATTTATATGATGTAGTTACTGAATTATTAATTTGATAAATTCATGTCTCTAATTAATAAA
>TU78084
GAAGAAGAAATGTATATTTATATGATGTAGTTACTGAATTATTAATTTGATAAATTCATGTCTCTAATTAATAAAAGTGTAATTATTATTTGATAATAATTAGGGGCTGGAATGTAGTAGACATGAAAGTGTTAATGGGTTTTTTGCTTGTCACGTGATCATGGTTGGGGGTCACGGGGTTGCGTAAGAATGGGAATATTAGTCACCTGTTCACTGATTAACGGCAGGGAGAGGTGAGCAGGGACGATGTATTTCTTTGTTGACCACAAAAACTTTTATACCATCAAGAAATATCAGTCTGTGCAATAAAAAGAAAAGCAATCAGAAGTACTTTTTGCCTCACCGATATTTTATTTATG

Function

NR:

description
hypothetical protein EH28_00938, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_00176813_00177864.mRNA False 886 mRNA 0.38 3 176628 177926
TU78084 True 359 lncRNA 0.34 1 176344 176702

Neighbor

gene id symbol gene type direction distance location
CI01000012_00095178_00097740 NA coding downstream 78888 94665 ~ 97740 (-)
CI01000012_00074656_00075480 NA coding downstream 100865 74585 ~ 75763 (-)
CI01000012_00017728_00018696 NA coding downstream 155836 17390 ~ 20792 (-)
CI01000012_00178282_00181473 NA coding upstream 256 178182 ~ 183012 (-)
CI01000012_00223417_00223713 NA coding upstream 45289 223215 ~ 224149 (-)
CI01000012_00260363_00261340 HCAR1-3 coding upstream 82370 260296 ~ 261508 (-)
CI01000012_00340814_00363240 HAAO coding upstream 162739 340665 ~ 363240 (-)
CI01000012_00382850_00384215 NA coding upstream 203785 381711 ~ 384426 (-)
G68492 NA non-coding downstream 31916 29219 ~ 144712 (-)
G68508 NA non-coding downstream 64462 111775 ~ 112166 (-)
G68489 NA non-coding downstream 151161 25170 ~ 25467 (-)
G68543 NA non-coding upstream 14222 192148 ~ 197284 (-)
G68547 NA non-coding upstream 28354 206280 ~ 211322 (-)
G68555 NA non-coding upstream 70586 248512 ~ 248805 (-)
G68560 NA non-coding upstream 91892 269818 ~ 270043 (-)
G68463 NA non-coding upstream 130839 308765 ~ 309093 (-)
G69150 NA other upstream 387537 565463 ~ 566956 (-)
G69161 NA other upstream 409678 587604 ~ 588015 (-)
G69277 NA other upstream 551994 729920 ~ 730465 (-)
G69332 NA other upstream 597438 775364 ~ 775879 (-)

Expression


Co-expression Network