CI01000012_00178282_00181473


Basic Information

Item Value
gene id CI01000012_00178282_00181473
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 178182 ~ 183012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_00178282_00181473.mRNA
ACCGATATTTTATTTATGCGTCACCAATGCAGTCCCTGTCTTAGTCTCTCAGCGGCTTTTGGAAAGGACATAGTAGCCGTTATATTATGTCAACAAAGAACATTCTCAACGGACGCGCCAAACGGATTAAGCCTACATGATCGCATCAAGGAGTATAGGATTCTGCTCCACTAAAAGGAAAATAATTTTACAGCCGCCAAACGTCGCCAACGAAAATTGATCAGCAAAGCTCCGAAGAGAATCAAGCAAACAATCACTGCATAGGTAAGCCTGTTGGGCTTTGTACTAATCATCTGTGTAGTTTTGGATTGCGCGCAGTTTGAATTGTGAAGGTTGTTTATCCATTGGGGATGATCGTGCGGTTGTGTTAATGTTTGTTGTTTGGCTTCAGTTGATTTTGTCCAGAGCTCTTTGGCCTGTTGCACAAAGCCAGTTTCAGTTTCTACCCAGGTAAGTTCAAGATTAGTTTGAGCAAACTCTGGTTTTTCGGGCTTATGACGGTGGATTGGTTTTTAGCGGGGTTTGTTGCTATGGTAACTAACGCTACACGGCTAACCTGCTCCGGAGCAGGTTTTATTCTGGGTTAGAGATCGCAAACCCAAACTCGACCAATCAGCTGTGAGTAAAGTGACATGTAGCTATCTGATGCAATAAAGCCACTGCCCCTGTATCTCTCGCTCCAAATTAAATCAGTTTATAGTGAAAACATTTTAGAGACAAAATTTCTCAACATTTGCTGTTAATTATTCATTATATTTATATTAAATAAAATAAAATTATGAATGATTCATGACATATTCATATAATTAGGCCGATTATATTAATTGACAATATTAAGCTTTGCTTTTAAATTAAAATAAATATAATGCATGCATAATATATAAAGCTTTCAAACAGATTAAGCTTACATGTATTCTTTTGAGCTCTTTGTGAAACTATATTAATTATTTGGTCTATTTGTTTGATTCACATGCATTGATATAGTCAGATATTTTCTTTCAGCTGCCTTCTCAAACTTTCACTGCAGCAGCAGTGTTTATTCCTGCTTTGTAAATGCGTTTTATTTCATATTTTTCATAACGATCTCTTAATCTTCGGAAGCGACATGAATTGCGCGGCTCTCTCGCGAGAAGTCAATCAAACTGATGTTCTCCTTGTTCCGTGTGATTGGCTGTTTGCTGCACGTGTCAGACTTTCAGGTGCACGCACTTTGCAAACTCTGAATTAAACCTGAGTTGACAGAGAAAGTTTATACCGAGAGTTGTGCAACAGTTGAACTTGATCTAAACCAGGTTGGATTTATCTGGATTTGTCAACCGCAAACCTACTCTGAAACTCAGAGTTTGTTCAACTAGCTTCATGCAACAGGCCACTGGTGTTTAAAGTTTGTTGTTGGCGATCTGTTTGTGTTGAAAATAATGTTGCGATGTTTATGGAGTTGACAGCGTTTGATTATGTGTCGCTGTGACGTTGTTGGAGAATTTGATGGGATATGCGAATATTGTTGACTTGTTTGAAAACACGCAAACATGAGTGTTGATGACATCACTGGCTTTGAAATGGATTGCGGTAAAAGGGAAACTAAACTCACTGCAAAGGCCTTGGCGAACAAAATTGAAAGTTTGCAAAAAGAACGAAAAACAAGTGTCTGCAAGAGAAAAAGGATTAGTTCATGAACATTTGGAAGCAGGAGCAAGGTCTAAAGAGAAAAGTGTACAACAACGGGTACTCTCACAGCCTCATCCCGTAGCACAACATCCATCTAGATGCAATCCAGTGGAACAGAGATCACAAGGAAATGCATTAAATTCACAATCCAACGATGAAGAGCAAAATAACATGTTGGGCATAATGAGAAAGCAAAATGAAATAACAACGCTATTGTTAAAACCGCAATGTTTATCATCCTTGCCCAAAAGAGATCTGAACGTGTTTGACGGTGACACATTACAGTATCATGCATTCAGAAGAGCTTTCATAAACAGCATTGAAAAACATCAAGTCAAAGTTGTAACTGACCCAGTGTTTGGAAATATACAGGATGTTCCTGTAGCGAATAAAGATGTGAAAAGACCTAAACCACATTCTCGTCCTGGAATTAAAGGAATCAGCTTTGCTACCACTGTGGTCGCTGCAAGCAAAGAAAGTGAATTTGAAAATACAGGAAAGAATAAGTTGGGAAAACAACCGCACAAAGAGAAGATTGGCTTCTTGAAAGAAAGTGGAGTTTGTTTTGGTTGTTTGTGCATTGGGCACATCAGCAAAGAGTGCAGAAAACGTCTTTCTTGTGATGTTTGCGGTTTTAAACCTCCAACTTTGCTGCATATCTTTCCTAAAGAAAAAGGAACAGATACAACTGAGAAGAAATCAAAGATGGCAGTGGATGATGTTTTAGTATCTAGTGGTCTTACTGGGGCTGGTGATTATGATTGTAAACTCTCGATTGTTCCTGTACAGATCAAGGCCAATAAAGGCAGCAAAATTGTCACTACTTGCGCCTTTTTAGATCAAGGGAGCACTGCTGTGTTTTGTACAGAGAGCTTAATGAGAAGACTCAATCTCACAGGAACCAAAGTGCGGATTCTTTTAAGAACTATGGGACAAGAAAAGGTTGTGAGTAGTCATGTTATATCTGGAATGGAGGTAGCTGGCTTGAATGGAAATGACTTTTGTGAATTACATCGAGTTTATACACAGGAAAGTATGCCTGTTCATCAAGGGAATATACCTCGAGAAAGTGATCTTCAAAGATGGCCCTATTTAAAGAGAGTTCATTTACCTGAGATTAAGGCAGGGATTGAGCTGCTGATAGGGACAAATGTTCCTAAAGCATTGGAACCATTGGAGGTAATCCGCAGCAGGAATGATGGACCCTATGCAATCAGGACAATGTTGGGATGGACTGTGAATGGCCCACTCTTTGGAGACAGTGAGAACACAATGGATTGTGCTCGGCCAGAAGTCACAGTCAACAGAATTTCAATTGTGAATTTGGAAGAAATGTGGCAACAGCAGTTTAAAATGGACTTCCCAGAATGTAGTCATGATGAACAAACTGGCCATTACAAAGAAGATCAAAAATTCATGGAACTGGTGACAAACTCTGTCAAACTTGTTGATGGGCATTATGAGATTGGCTTACCTCTGAAAAGGAGAGTGCACATGCCAAACAATTGGAAAATCATGGAGCAACGTGCTTTGCATCTAAAGAGGAGACTTCAAAAAGATTCTGTCTTTCTTGTTGACTATAAAACCTTCATAAAGGATATGGTCTCCAAAGGTTATGCAGAGCGAGTGCCTGCAGAGGATATGACACGACCAGACCTTATCAGCTCACTCATTGGAGTGGTGACAAGATTCAGAAAAGAACCAGTGGTGATCATGGCAGATGTGGAAGCAATGTTCCATCAAGTAAGAGTACCAGCAGATGATGTTGATTTGTTAAGGTTTCTTTGGTGGCCTGATAGGGACTTGAGTCAAGATCCAGTTGACTTTAGGATGCGGGTACACCTCTTTGGAGCAACATCATCTCCAAGCTGCGCAAACTTCGCTTTTAGGAAATGTGCTCAAGATCATAAAGAGCAGTTCAATAGGGAATCGGTGGATAAAATCCTACATTCCTTTTATGTTGATGATTGTCTGGTTTCAGTGGCTTCAGTTGAACAAGCGATAACATTGTACAAGGAGCTTGTAGCCATATGTGCCAAAGGTGGATTTAAGCTCACAAAATGGATGAGCAACAGATCTCAAGTTCTGGATGTAATACCCCTGGACCAAAGAGCAACGTCGGTGACAAACTTGAGCATAGATTGGGATTCTCCATCAATTGAGAGAGTGTTAGGAGTGCAGTGGTGCATTCAGTCTGACGTATTCAAGTTTAAGATTGTAATCAGAGACAGACCTCTGACAAGAAGAGGAATCCTATCCATGATTAGTTCTATTTATGATCCATTGGGAATTGTGAGTCCTGTTGTGTTGTCTGCAAAAAGATCTTGCAAGATATTTGCAAAGGAGATTTGGGATGGGATGATGTCTTGCCCGAATTGGTTGTTCAAAAATGGACCAGATGGCTGCAAGAACTTCACCATCTGGAAAGCTTTGAGCTTACAAGATGTTTAAAACCTCCAGACTTTGGTGACATCTCTACTGCACAGTTGCATCATGCAACTGTGCAGTAGAGTTGCACAGTTGCATGACATACTTGCTGTTACATAATATA
>TU78086
AACCAAAGTGCGGATTCTTTTAAGAACTATGGGACAAGAAAAGGTTGTGAGTAGTCATGTTATATCTGGAATGGAGGTAGCTGGCTTGAATGGAAATGACTTTTGTGAATTACATCGAGTTTATACACAGGAAAGTATGCCTGTTCATCAAGGGAATATACCTCGAGAAAGTGATCTTCAAAGATGGCCCTATTTAAAGAGAGTTCATTTACCTGAGATTAAGGCAGGGATTGAGCTGCTGATAGGGACAAATGTTCCTAAAGCATTGGAACCATTGGAGGTAATCCGCAGCAGGAATGATGGACCCTATGCAATCAGGACAATGTTTGGAGACAGTGAGAACACAATGGATTGTGCTCGGCCAGAAGTCACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_00178282_00181473.mRNA False 4219 mRNA 0.40 4 178182 183012
TU78086 True 373 TUCP 0.42 2 179563 179962

Neighbor

gene id symbol gene type direction distance location
CI01000012_00176813_00177864 NA coding downstream 256 176344 ~ 177926 (-)
CI01000012_00095178_00097740 NA coding downstream 80442 94665 ~ 97740 (-)
CI01000012_00074656_00075480 NA coding downstream 102419 74585 ~ 75763 (-)
CI01000012_00017728_00018696 NA coding downstream 157390 17390 ~ 20792 (-)
CI01000012_00223417_00223713 NA coding upstream 40203 223215 ~ 224149 (-)
CI01000012_00260363_00261340 HCAR1-3 coding upstream 77284 260296 ~ 261508 (-)
CI01000012_00340814_00363240 HAAO coding upstream 157653 340665 ~ 363240 (-)
CI01000012_00382850_00384215 NA coding upstream 198699 381711 ~ 384426 (-)
CI01000012_00427641_00472235 NA coding upstream 244561 427573 ~ 472577 (-)
G68492 NA non-coding downstream 33470 29219 ~ 144712 (-)
G68508 NA non-coding downstream 66016 111775 ~ 112166 (-)
G68489 NA non-coding downstream 152715 25170 ~ 25467 (-)
G68543 NA non-coding upstream 9136 192148 ~ 197284 (-)
G68547 NA non-coding upstream 23268 206280 ~ 211322 (-)
G68555 NA non-coding upstream 65500 248512 ~ 248805 (-)
G68560 NA non-coding upstream 86806 269818 ~ 270043 (-)
G68463 NA non-coding upstream 125753 308765 ~ 309093 (-)
G69150 NA other upstream 382451 565463 ~ 566956 (-)
G69161 NA other upstream 404592 587604 ~ 588015 (-)
G69277 NA other upstream 546908 729920 ~ 730465 (-)
G69332 NA other upstream 592352 775364 ~ 775879 (-)
CI01000012_01139864_01192154 TTC7A other upstream 952664 1135676 ~ 1192154 (-)

Expression


Co-expression Network