CI01000012_00260363_00261340 (HCAR1-3)


Basic Information

Item Value
gene id CI01000012_00260363_00261340
gene name HCAR1-3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 260296 ~ 261508 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_00260363_00261340.mRNA
ACCAAGTTTACTTCTAGAGAGTGAGGACAGCACAAGTTAGTTGTAACACCATTGTTTTATCTAATTAGAAATGTGTTGAAAGCAGAATGGTACTTCTGTTGCAGAATTGTGTTGAACTGTGAACTGTATTTACAGAAACTACACAGCAACTCTGACTGTTGAACTACCATGACGTCGAACATCACTGCACATCACTGCGGTACGTCAACTCAGAACCTGGTTGCAGCCGTCCTTCCTCCTTTACTCATCATCGAGCTGTTACTTGGTCTACCTGGCAATGTCTTGGCACTGTCAGTTTTCAGCAAAAACCTTAAGTCTCGGAGGGCCAACGTCATGTTCCTCTTCAACCTGGTTTTGTCTGACTTTCTGCTTCTGGTGAGCCTACCCTTCCGTATTGACAATTTCATTCGTGGCGAGAAGTGGATATTTGGAGATGCGTGGTGTAGGGTCAACCTATTTATGCTGTCAGTCAATCGTTCGGCCAGCATTGCATTCATGACCGCCGTGGCTGTTGACCGCTACTTTAAAGTGGTCCATCCGCATCACAAAATTAATCACATAAGCACAAAACAAGCAGCTGGGGTTGCCTGCCTAATCTGGAGTGTTGTGGTATCTCTAAGGATCCATTTGCTGGCCAACAATCTTCTGAGTGTGAAAAATAATGTTTCTCTTTGTAGGAGCTTCAGTAACTATGCGAAACCAACACTAGGCATCAGCCTGCATTATGCATTGTTTAATTTAGAGTTCTTTGTGCCTCTATTACTTCTGGTCCTCTGCTCTGTGCGTATTGCATGTATCCTACGGTCTCGCCAGATGGACAAGAACAAGAGAGGGCAAAGGGCTATTCGAACTGTACTAGTGATCGTTGGGGTTTTTTCCCTCTGTTTCTTCCCTAGCATTGCCACAGCATTTACAGCACTCTATTTTAAAAATCTTGGAGAGGAGTACTGTAAGGCTTACAGTCTCACCAGCCAGTTGTTCTCTATGTCCATAGCCTTCACCTACCTAAACAGTGCTCTGGACCCGGTCATCTACTGCTTCTCCAGCTCTACCTTCCGCAATTATTTGAAAAGAGCCATAAACCAGACGGGATTAATGAAGCTACAGATAAGCCGTCGGGACAGTATGTCCACCGGATATGATTGAATAGACTGGGGTTTTATGAGTGTCAGTGCAGATTTACTGCTTAATATACAATGACTTTTTCATTAAA

Function

symbol description
hcar1-3 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human HCAR1 (hydroxycarboxylic acid receptor 1); HCAR2 (hydroxycarboxylic acid receptor 2); and HCAR3 (hydroxycarboxylic acid receptor 3).

NR:

description
Nicotinic acid receptor

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_00260363_00261340.mRNA True 1213 mRNA 0.44 1 260296 261508

Neighbor

gene id symbol gene type direction distance location
CI01000012_00223417_00223713 NA coding downstream 36147 223215 ~ 224149 (-)
CI01000012_00178282_00181473 NA coding downstream 77284 178182 ~ 183012 (-)
CI01000012_00176813_00177864 NA coding downstream 82370 176344 ~ 177926 (-)
CI01000012_00095178_00097740 NA coding downstream 162556 94665 ~ 97740 (-)
CI01000012_00074656_00075480 NA coding downstream 184533 74585 ~ 75763 (-)
CI01000012_00340814_00363240 HAAO coding upstream 79157 340665 ~ 363240 (-)
CI01000012_00382850_00384215 NA coding upstream 120203 381711 ~ 384426 (-)
CI01000012_00427641_00472235 NA coding upstream 166065 427573 ~ 472577 (-)
CI01000012_00520655_00552630 NA coding upstream 258631 520139 ~ 553820 (-)
CI01000012_00647774_00648451 NA coding upstream 386078 647586 ~ 648945 (-)
G68555 NA non-coding downstream 11491 248512 ~ 248805 (-)
G68547 NA non-coding downstream 48974 206280 ~ 211322 (-)
G68543 NA non-coding downstream 63012 192148 ~ 197284 (-)
G68492 NA non-coding downstream 115584 29219 ~ 144712 (-)
G68560 NA non-coding upstream 8310 269818 ~ 270043 (-)
G68463 NA non-coding upstream 47257 308765 ~ 309093 (-)
G68567 NA non-coding upstream 52415 313923 ~ 314910 (-)
G68568 NA non-coding upstream 55432 316940 ~ 317168 (-)
G68561 NA non-coding upstream 56920 318428 ~ 319117 (-)
G69150 NA other upstream 303955 565463 ~ 566956 (-)
G69161 NA other upstream 326096 587604 ~ 588015 (-)
G69277 NA other upstream 468412 729920 ~ 730465 (-)
G69332 NA other upstream 513856 775364 ~ 775879 (-)
CI01000012_01139864_01192154 TTC7A other upstream 874168 1135676 ~ 1192154 (-)

Expression


Co-expression Network