ddost (ddost,LOC107673085,LOC107687429)


Basic Information

Item Value
gene id ddost
gene name ddost,LOC107673085,LOC107687429
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 15459862 ~ 15466085 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178833
GGAGAAGCGCGCTGCTGGCGCTAGCGCTGTGCCTGGTGGTGCGGACGGTCTCGGGAGACGGGAAGACCCTGGTTCTGCTGGATAACCCGAACATCAGAGACACCCATTCAATCTTCTTCCGCAGCCTAGCAGATCGTGGATTCGACCTCACATTTAAGACTGCTGATGATCCTAGCCTCTCCTTGATCAAGTATGGCCAGTTCCTCTACGACCATCTCATCATTTTCTCCCCGACTGTGGAAGATTTTGGAGGAAACATAAATGTTGAGACCATCACAGCTTTCATTGATGGTGGAGGCAACGTTCTAGTGGCAGCCAGCTCAGATATTGGTGACCCACTGCGAGAGCTGGGAAGTGAATGTGGAATTGAGTTTGATGAAGAGAAAACTGGTGTTATTGACCATCATAATTATGACGTGTCTGATCCTGGTGAGcACACTCTGATTGTTGCAGACCCAGAGAACCTCCTTAAAGCTCCGACCATTGTTGGCAAGCCCACTGAGAAACCCATCCTCTTCAAAGGTGTTGGCATGGTGGCCGATCCTGACAACCCTCTGGTCCTGGACATTCTGACCGGCTCCTCCACCTCTTATTCCTATTTCCCTGATCGTCCAATTACACAATACCCTCACGCAGTTGGAAAGAACACCCTCCTGATTGCTGGTCTCCAAGCAAGAAACAATGCTCGTGTGGTCTTCAGTGGTTCATTACATTTCTTCAGTGATGCTTTCTTCAACTCCGCTGTGCAGAAAGCCGTCCCAGGCTCTAAGAgttCTCACAGACTGGTAACCAGGATCTAGCTGAAGCTCTGTCGCGCTGGGTGTTTAAAGAGGCAGGTGTCCTCAGAGTTGGGGCTGTAACCCATCACCCAGTGGGGGAGAGCACTCCTCCTGCAGCTTACACCATCACTGACCTTGTGGAGTACAGCATTGTGATTGAGATGTTGTCTGAGGGCCGATGGGTGCCGTTTGATGGAGATGACATTCAGCTAGAGTTCGTCAGAATTGACCCCTTCGTCAGGACCTACCTCAAGAAAAATGGAGGCAAATACAGTGTCCAGTTTAAGCTGCCTGATGTGTACGGAGTGTTTCAATTTAAAGTCGATTACAACAGACTGGGATACACACATCTTTACTCCTCCACACAGGTCTCTGTGCGTCCACTGCAGCACACCCAGTATGAGCGTTTCATTCCCTCTGCGTTCCCTTACTACGCCAGCGTGTTCTCCATGATGGCTGGACTGTTCGTCTTCAGTTTTGTCTTCCTTCAcatgaaagagaaggagaagtcTGATTAAGCtggaggttttttttatttagaaaatgtaatgtaatgagatTGGGTTGATCCAGTCTTCTTGCACAAGTCATTGGGGGAAATTTTGGAGTGTGCTGGTGTGGGGTCATGAGTCAAATATGCCACTACAGGTTTTAAGCAGCATTtgttgattctttttttttatgggttCAGTTTTTGTTGTTGAACGATTTTCAGGCTGTTCCATCCATCATtcacttatttaaataaaacgaGAGGTCTGTTTGTGAACTTAAATGTTGTTTTGATTAGAACCCCATGACAGACAATGCACTGATCTGTTTGTAAAGCTTGGACGAAGGATGTTCAAATtctgtaaaatcaccaaaataAAATGTCCATTCCACCTCTCTTCTAAA
>XM_007246253.3
CAGAGTGTACAGCCGCTCTAGCGCTGACGTTGTCCAAGGCAGGAAAATGGCGATGTCGGGCTGTGCAGCGCGGGGCGGCAGGAGAGCGGGCTCGGAGCGGGGTCTGCGGGGACCGGCGGGGCCTGGGAGAAGCGCGCTGCTGGCGCTAGCGCTGTGCCTGGTGGTGCGGACGGTCTCGGGAGACGGGAAGACCCTGGTTCTGCTGGATAACCCGAACATCAGAGACACCCATTCAATCTTCTTCCGCAGCCTAGCAGATCGTGGATTCGACCTCACATTTAAGACTGCTGATGATCCTAGCCTCTCCTTGATCAAGTATGGCCAGTTCCTCTACGACCATCTCATCATTTTCTCCCCGACTGTGGAAGATTTTGGAGGAAACATAAATGTTGAGACCATCACAGCTTTCATTGATGGTGGAGGCAACGTTCTAGTGGCAGCCAGCTCAGATATTGGTGACCCACTGCGAGAGCTGGGAAGTGAATGTGGAATTGAGTTTGATGAAGAGAAAACTGGTGTTATTGACCATCATAATTATGACGTGTCTGATCCTGGTGAGcACACTCTGATTGTTGCAGACCCAGAGAACCTCCTTAAAGCTCCGACCATTGTTGGCAAGCCCACTGAGAAACCCATCCTCTTCAAAGGTGTTGGCATGGTGGCCGATCCTGACAACCCTCTGGTCCTGGACATTCTGACCGGCTCCTCCACCTCTTATTCCTATTTCCCTGATCGTCCAATTACACAATACCCTCACGCAGTTGGAAAGAACACCCTCCTGATTGCTGGTCTCCAAGCAAGAAACAATGCTCGTGTGGTCTTCAGTGGTTCATTACATTTCTTCAGTGATGCTTTCTTCAACTCCGCTGTGCAGAAAGCCGTCCCAGGCTCTAAGAGgttCTCACAGACTGGTAACCAGGATCTAGCTGAAGCTCTGTCGCGCTGGGTGTTTAAAGAGGCAGGTGTCCTCAGAGTTGGGGCTGTAACCCATCACCCAGTGGGGGAGAGCACTCCTCCTGCAGCTTACACCATCACTGACCTTGTGGAGTACAGCATTGTGATTGAGATGTTGTCTGAGGGCCGATGGGTGCCGTTTGATGGAGATGACATTCAGCTAGAGTTCGTCAGAATTGACCCCTTCGTCAGGACCTACCTCAAGAAAAATGGAGGCAAATACAGTGTCCAGTTTAAGCTGCCTGATGTGTACGGAGTGTTTCAATTTAAAGTCGATTACAACAGACTGGGATACACACATCTTTACTCCTCCACACAGGTCTCTGTGCGTCCACTGCAGCACACCCAGTATGAGCGTTTCATTCCCTCTGCGTTCCCTTACTACGCCAGCGTGTTCTCCATGATGGCTGGACTGTTCGTCTTCAGTTTTGTCTTCCTTCAcatgaaagagaaggagaagtcTGATTAAGCtggaggttttttttatttagaaaatgtaatgtaatgagatTGGGTTGATCCAGTCTTCTTGCACAAGTCATTGGGGGAAATTTTGGAGTGTGCTGGTGTGGGGTCATGAGTCAAATATGCCACTACAGGTTTTAAGCAGCATTtgttgattctttttttttatgggttCAGTTTTTGTTGTTGAACGATTTTCAGGCTGTTCCATCCATCATtcacttatttaaataaaacgaGAGGTCTGTTTGTGAACTTAAATGTTGTTTTGATTAGAACCCCATGACAGACAATGCACTGATCTGTTTGTAAAGCTTGGACGAAGGATGTTCAAATtctgtaaaatcaccaaaataAAATGTCCATTCCACCTCTCTTCTAAA

Function

symbol description
ddost Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in axis; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ir. Orthologous to human DDOST (dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit).

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like

GO:

id name namespace
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU178833 False 1676 TUCP 0.47 11 15459987 15466085
XM_007246253.3 True 1802 mRNA 0.48 11 15459862 15466085

Neighbor

gene id symbol gene type direction distance location
zbtb17 zbtb17,LOC107737543,LOC107591087 coding upstream 3309 15443380 ~ 15456553 (+)
hspb7 hspb7,LOC107591086,LOC107578967,LOC107716085 coding upstream 19263 15434760 ~ 15440599 (+)
epha2 epha2,epha2b,LOC107591085,LOC107737541,LOC107673100,LOC107687430,LOC107593930,LOC107716125 coding upstream 130546 15291328 ~ 15329316 (+)
spen spen,LOC107737540,LOC107591084,LOC107716126,LOC107593929 coding upstream 223646 15195555 ~ 15236216 (+)
tmem82 tmem82 coding upstream 269442 15184896 ~ 15190420 (+)
plekhm2 plekhm2 coding downstream 1287 15467372 ~ 15490494 (+)
LOC103029593 ano7l1,ano11,LOC107591089,LOC107737547,LOC107716119 coding downstream 38696 15504781 ~ 15529128 (+)
arhgef19 arhgef19,LOC103384789 coding downstream 69060 15535145 ~ 15575450 (+)
LOC103030870 NA coding downstream 115166 15581251 ~ 15583937 (+)
rnf223 rnf223 coding downstream 173468 15639553 ~ 15727428 (+)
G132158 NA non-coding upstream 65446 15387928 ~ 15394416 (+)
G132154 NA non-coding upstream 72326 15383474 ~ 15387536 (+)
G132148 NA non-coding upstream 179715 15279797 ~ 15280147 (+)
G132115 NA non-coding upstream 279007 15178856 ~ 15180855 (+)
G132110 NA non-coding upstream 312779 15146348 ~ 15147083 (+)
G132205 NA non-coding downstream 16843 15482928 ~ 15483289 (+)
G132211 NA non-coding downstream 65046 15531131 ~ 15531469 (+)
G132231 NA non-coding downstream 70619 15536704 ~ 15537444 (+)
G132232 NA non-coding downstream 80329 15546414 ~ 15627127 (+)
G132233 NA non-coding downstream 104088 15570173 ~ 15570741 (+)
fam131c fam131c other upstream 62293 15364390 ~ 15397569 (+)
G132146 LOC106581475 other upstream 219465 15240080 ~ 15240397 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other upstream 286965 15168008 ~ 15172897 (+)
G131677 NA other upstream 2519015 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 2696152 12689154 ~ 12763710 (+)
LOC103031494 NA other downstream 264812 15730897 ~ 15737781 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other downstream 2013853 17479938 ~ 17524353 (+)
snrpg snrpg other downstream 2040366 17506451 ~ 17509815 (+)
G133076 NA other downstream 3577409 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 3881383 19347468 ~ 19360891 (+)

Expression


Co-expression Network