LOC103031494


Basic Information

Item Value
gene id LOC103031494
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 15730897 ~ 15737781 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178956
CATCCTCTGAGGCAGCGCCGGCATTGCCACGCCCATGCagtttcagccaatcacagcagaGCAGAACAGCTGAACGCAACACACCTTTCTAATTAGTAAGACGCGAAAAACTCTGCGTGCTCTGCAGCAGGTGCATCACGATTGGCCGTGCCCAAAAAGAAGTGAATGCAGTGCGTGTGGTGTTTCCTCATGTCAGGATGTTGCTGTGCTGGTGTCCGGTGTCACAGCCTGAAGTATCAGTTCCTGAGAGTCTATGCCAACAAAAGAATAGAAGATCTCCACAAACTTCTCCTGGGAACATTGCTACAGATATTTAAAGAACATGAAGAGGACATGAAACCCCAAATCAAAAGACTTTAAAGACTTACATCATTGCCATTTTCCTGCAGAGGCTgactattgctactactacaCACAACTATAATATCAGTGTTGCTCCCAGGACCTGTGACTGCACAAATTCCTCTGGAGTGATGTTGGACAAACTCTGCCATTTGCAAAATTCAAAGTTGAAGAACAGGAAACAAGTGCAGACTGCAACAAATGATCAACTGAAAAACATCCTGTGCAGCAACACCGTGCTAAACTTACCTGTAAGATGGTAATGCTTAGAGTCAGGTATTCATTCTGATGCTTTGTAAGTGCAATAACATTAATGGAATTAGGAAAGAAAAGAACCACACATTACTTAGAAcagctttattatttaaataaagtacataAGACATTATTTTACATAAGACATGAGACACTTTGTGAAGAAAAATGTTCACAAAACAGTACAGTGCACATgcaaatgaagaaaaacagcaaattttACATGTGTACTGTACTGaatgttttagtttatatatctTTGAGCACTTAAAGAAAGAgccttaaaaatgttatttaaattagCAGTCTCTGATCCTTTCTTAACAATtgtaattttgctttttatttgtaaatgtattttattttctaatgaatgcaaatgttttaattgtttactatttacatgtttttctgttatttatgtACGTTTTTTCGtgttttatttacatgcacACTGTACCGACTGCCCAGTTTATTTACATGTGCATCGTACTGGTTTCTCAACAGAAATGCTGTGTATGTAAATCATGTTCAAAATAAAGCTGTTGCAAATAATGTG
>TU178958
CATCCTCTGAGGCAGCGCCGGCATTGCCACGCCCATGCagtttcagccaatcacagcagaGCAGAACAGCTGAACGCAACACACCTTTCTAATTAGTAAGACGCGAAAAACTCTGCGTGCTCTGCAGCAGGTGAGCAGAAAAGctgatttattttcatattttcagctGAAAATATTGGTTTTATGTCACCAGTACCATAATATAATATCGTTAAATggGTGCATCACGATTGGCCGTGCCCAAAAAGAAGTGAATGCAGTGCGTGTGGTGTTTCCTCATGTCAGGATGTTGCTGTGCTGGTGTCCGGTGTCACAGCCTGAAGTATCAGTTCCTGAGAGTCTATGCCAACAAAAGAATAGAAGATCTCCACAAACTTCTCCTGGGAACATTGCTACAGAGGCTgactattgctactactacaCACAACTATAATATCAGTGTTGCTCCCAGGACCTGTGACTGCACAAATTCCTCTGGAGTGATGTTGGACAAACTCTGCCATTTGCAAAATTCAAAGTTGAAGAACAGGAAACAAGTGCAGACTGCAACAAATGATCAACTGAAAAACATCCTGTGCAGCAACACCGTGCTAAACTTACCTGTAAGATGGTAATGCTTAGAGTCAGGTATTCATTCTGATGCTTTGTAAGTGCAATAACATTAATGGAATTAGGAAAGAAAAGAACCACACATTACTTAGAAcagctttattatttaaataaagtacataAGACATTATTTTACATAAGACATGAGACACTTTGTGAAGAAAAATGTTCACAAAACAGTACAGTGCACATgcaaatgaagaaaaacagcaaattttACATGTGTACTGTACTGaatgttttagtttatatatctTTGAGCACTTAAAGAAAGAgccttaaaaatgttatttaaattagCAGTCTCTGATCCTTTCTTAACAATtgtaattttgctttttatttgtaaatgtattttattttctaatgaatgcaaatgttttaattgtttactatttacatgtttttctgttatttatgtACGTTTTTTCGtgttttatttacatgcacACTGTACCGACTGCCCAGTTTATTTACATGTGCATCGTACTGGTTTCTCAACAGAAATGCTGTGTATGTAAATCATGTTCAAAATAAAGCTGTTGCAAATAATGTG
>XR_454515.3
atcacagcagaGCAGAACAGCTGAACGCAACACACCTTTCTAATTAGTAAGACGCGAAAAACTCTGCGTGCTCTGCAGCAGGTGCATCACGATTGGCCGTGCCCAAAAAGAAGTGAATGCAGTGCGTGTGGTGTTTCCTCATGTCAGGATGTTGCTGTGCTGGTGTCCGGTGTCACAGCCTGAAGTATCAGTTCCTGAGAGTCTATGCCAACAAAAGAATAGAAGATCTCCACAAACTTCTCCTGGGAACATTGCTACAGATATTTAAAGAACATGAAGAGGACATGAAACCCCAAATCAAAAGACTTTAAAGACTTACATCATTGCCATTTTCCTGCAGAGGCTgactattgctactactacaCACAACTATAATATCAGTGTTGCTCCCAGGACCTGTGACTGCACAAATTCCTCTGGAGTGATGTTGGACAAACTCTGCCATTTGCAAAATTCAAAGTTGAAGAACAGGAAACAAGTGCAGACTGCAACAAATGATCAACTGAAAAACATCCTGTGCAGCAACACCGTGCTAAACTTACCTGTAAGATGGTAATGCTTAGAGTCAGGTATTCATTCTGATGCTTTGTAAGTGCAATAACATTAATGGAATTAGGAAAGAAAAGAACCACACATTACTTAGAAcagctttattatttaaataaagtacataAGACATTATTTTACATAAGACATGAGACACTTTGTGAAGAAAAATGTTCACAAAACAGTACAGTGCACATgcaaatgaagaaaaacagcaaattttACATGTGTACTGTACTGaatgttttagtttatatatctTTGAGCACTTAAAGAAAGAgccttaaaaatgttatttaaattagCAGTCTCTGATCCTTTCTTAACAATtgtaattttgctttttatttgtaaatgtattttattttctaatgaatgcaaatgttttaattgtttactatttacatgtttttctgttatttatgtACGTTTTTTCGtgttttatttacatgcacACTGTACCGACTGCCCAGTTTATTTACATGTGCATCGTACTGGTTTCTCAACAGAAATGCTGTGTATGTAAATCATGTTCAAAATAAAGCTGTTGCAAATAATGTGCTTCCTCTTTTCTAattctattgttttatatatagaatataacaGAACAAATGTCTGACTTTACATATCAACAGTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178956 False 1156 lncRNA 0.37 4 15730897 15737702
TU178958 False 1165 TUCP 0.37 4 15730897 15737702
XR_454515.3 True 1186 misc_RNA 0.36 4 15730946 15737781

Neighbor

gene id symbol gene type direction distance location
rnf223 rnf223 coding upstream 3469 15639553 ~ 15727428 (+)
LOC103030870 NA coding upstream 146960 15581251 ~ 15583937 (+)
arhgef19 arhgef19,LOC103384789 coding upstream 155447 15535145 ~ 15575450 (+)
LOC103029593 ano7l1,ano11,LOC107591089,LOC107737547,LOC107716119 coding upstream 201769 15504781 ~ 15529128 (+)
plekhm2 plekhm2 coding upstream 240403 15467372 ~ 15490494 (+)
hes4 hes4 coding downstream 532468 16270249 ~ 16272189 (+)
perm1 NA coding downstream 659119 16396900 ~ 16409084 (+)
noc2l noc2l coding downstream 761691 16499472 ~ 16548502 (+)
LOC111194095 NA coding downstream 1116487 16854268 ~ 16867333 (+)
LOC103025506 LOC108425525 coding downstream 1217970 16955751 ~ 17038031 (+)
G132253 NA non-coding upstream 62160 15668208 ~ 15668737 (+)
G132248 NA non-coding upstream 93362 15636923 ~ 15637535 (+)
LOC103029913 NA non-coding upstream 94986 15593395 ~ 15635911 (+)
G132232 NA non-coding upstream 103770 15546414 ~ 15627127 (+)
G132233 NA non-coding upstream 160156 15570173 ~ 15570741 (+)
G132314 NA non-coding downstream 73379 15811160 ~ 15839570 (+)
G132331 NA non-coding downstream 153172 15890953 ~ 15896037 (+)
G132355 agrn non-coding downstream 436545 16174326 ~ 16178359 (+)
G132394 NA non-coding downstream 591331 16329112 ~ 16329721 (+)
G132402 NA non-coding downstream 618646 16356427 ~ 16416838 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 264812 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 333328 15364390 ~ 15397569 (+)
G132146 LOC106581475 other upstream 490500 15240080 ~ 15240397 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other upstream 558000 15168008 ~ 15172897 (+)
G131677 NA other upstream 2790050 12913491 ~ 12940847 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other downstream 1742157 17479938 ~ 17524353 (+)
snrpg snrpg other downstream 1768670 17506451 ~ 17509815 (+)
G133076 NA other downstream 3305713 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 3609687 19347468 ~ 19360891 (+)
G133246 NA other downstream 4385609 20123390 ~ 20124548 (+)

Expression


Co-expression Network