snrpg (snrpg)


Basic Information

Item Value
gene id snrpg
gene name snrpg
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 17506451 ~ 17509815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU179338
tagcGCAGTTCCGACGCTCATCTCTCCGCCGTTGCTGCTTCTGAACATCCCGCGCTGATTAAACATGAGTAAAGCTCATCCTCCAGAGCTGAAGAAGTTTATGGACAAGAAGCTGTCATTAAAGCTTAATGGTGGTCGGCATGTCCAAGGTATCCTCAGAGGATTTGACCCCTTTATGAATCTGGTGGTGGATGACTGCTTAGAAATGTCCCCAGGGGGACAACAGAACACCATTGGCATGGTGGTGATCAGAGGAAACAGTATAATTATGCTGGAGGCTCTTGAGAGAGTTTGAGCATGAAGAACTCCCAAGTCCCACAATCCCCCACCTCAAGGATGTGcccctttttgtttttgttagtaAACAACTGAAAACGTGTAATATCTTTGCAATGTATGAGTGATAAGGTGTTGTTTTTAGACACCTTTAAtctgattttgtttgtttttgatatGGTGAACCTTTTGTCAATAAATTAGATATGAAAATAA
>XM_022677279.1
CCACGCActtaaaattaaagctttgCGTGGCTACAATTAAACCAGCCTTAGTTTTAGCTGCACAGAGGTTaatttttagctgtgtaaagctATTCATTTCCTGGTTTTACCccaaaagtattttaatacagtttctAAAGTCCTGGGTTTTCTGCTTCTGTGAGTGAGGCAGTGTGTGGTAATAGCGGCGCCGCTGCAGCAGGGGGCGGTACAGGCCGCAGCCGAAGTCCGGGAGAAGCGTCACCTCCGCTGTGAGGCgcgtgtttcagtgttttagcGCAGTTCCGACGCTCATCTCTCCGCCGTTGCTGCTTCTGAACATCCCGCGCTGATTAAACATGAGTAAAGCTCATCCTCCAGAGCTGAAGAAGTTTATGGACAAGAAGCTGTCATTAAAGCTTAATGGTGGTCGGCATGTCCAAGGTATCCTCAGAGGATTTGACCCCTTTATGAATCTGGTGGTGGATGACTGCTTAGAAATGTCCCCAGGGGGACAACAGAACACCATTGGCATGGTGGTGATCAGAGGAAACAGTATAATTATGCTGGAGGCTCTTGAGAGAGTTTGAGCATGAAGAACTCCCAAGTCCCACAATCCCCCACCTCAAGGATGTGcccctttttgtttttgttagtaAACAACTGAAAACGTGTAATATCTTTGCAATGTATGAGTGATAAGGTGTTGTTTTTAGACACCTTTAAtctgattttgtttgtttttgatatGGTGAACCTTTTGTCAATAAATTAGATATGAAAATAA

Function

symbol description
snrpg Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule. Is expressed in liver. Orthologous to several human genes including SNRPG (small nuclear ribonucleoprotein polypeptide G).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0004148 dihydrolipoyl dehydrogenase activity molecular_function

KEGG:

id description
K11099 SNRPG, SMG; small nuclear ribonucleoprotein G

RNA

RNA id representative length rna type GC content exon number start site end site
TU179338 False 492 lncRNA 0.42 4 17506725 17509815
XM_022677279.1 True 766 mRNA 0.44 4 17506451 17509815

Neighbor

gene id symbol gene type direction distance location
LOC103046182 NA coding upstream 2387 17498763 ~ 17504064 (+)
cs cs,LOC107707042,LOC107697968,LOC107671863 coding upstream 19452 17471482 ~ 17486999 (+)
LOC103024256 LOC108425513,LOC107671862,LOC107697970,LOC107756420 coding upstream 45618 17376371 ~ 17460833 (+)
LOC103047606 si:ch211-210c8.6,LOC108425517,LOC106567173 coding upstream 157645 17342501 ~ 17348806 (+)
dazap2 dazap2 coding upstream 196387 17301927 ~ 17310064 (+)
fam50a fam50a coding downstream 33967 17543782 ~ 17562016 (+)
LOC103023305 NA coding downstream 54592 17564407 ~ 17589725 (+)
sars sars,LOC107671868,LOC107697960 coding downstream 91309 17601124 ~ 17627589 (+)
LOC103044854 LOC103044854,LOC108425484 coding downstream 120956 17630771 ~ 17732521 (+)
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding downstream 294268 17804083 ~ 18021997 (+)
G132588 NA non-coding upstream 38237 17466270 ~ 17468214 (+)
G132586 NA non-coding upstream 130789 17372066 ~ 17375662 (+)
G132585 NA non-coding upstream 142319 17362582 ~ 17364132 (+)
G132547 NA non-coding upstream 281796 17222902 ~ 17224655 (+)
G132550 NA non-coding upstream 317967 17187875 ~ 17188484 (+)
G132718 NA non-coding downstream 219502 17729317 ~ 17734305 (+)
G132741 NA non-coding downstream 235146 17744961 ~ 17746840 (+)
G132750 NA non-coding downstream 261539 17771354 ~ 17771564 (+)
G132752 NA non-coding downstream 263920 17773735 ~ 17773996 (+)
G132767 NA non-coding downstream 391458 17901273 ~ 17902022 (+)
LOC103031494 NA other upstream 1768670 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 2040366 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 2108882 15364390 ~ 15397569 (+)
G132146 LOC106581475 other upstream 2266054 15240080 ~ 15240397 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other upstream 2333554 15168008 ~ 15172897 (+)
G133076 NA other downstream 1533679 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 1837653 19347468 ~ 19360891 (+)
G133246 NA other downstream 2613575 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 2783348 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 3257101 20766916 ~ 20783861 (+)

Expression


Co-expression Network