G132813



Basic Information


Item Value
gene id G132813
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18053409 ~ 18053975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU179622
CCTCTAAGAGGGTGACCCACTCATCAAGTACACAGCTGTTCCAAGTACACAACAACCGTCCTGTGTCCTCCCATCCTCGGAAGTCCGCACTCGCGATCCGAACTTCTTAAGTCCGTAATTGTCAAGTACAAGAGTCCAGACTTGTGTACTTGTGTATTGAGAAACGGCCACTGTGCACCTCTAAATATCTTCAAGTGGTTGTGGTtctaacattatttatttattgataattattatttattggccTCTCTCAATACACAAGTACGGACTTGGGAAGTTCGGATCGCGAGTGCGGACTCCCGAGAACAGGAGGAAGCGGGACGGTTGTTGTGTAATTGGAACAGCTGTGTACTTGATGATGTCACCCTCTTAGAGGAGCGGAAAGCATTGTTCCGAAAAAACGTAGGAGCACATTTTTACCTAGCCGCTttcttaacaaataaaccacatatctgAAGTCTAAACCCCTACATTCTCGcctaaaaaataacttaaaacattgttttaacacAAAGCAGTACTGTTTTTAAACGTACAGGTGCTTACAGTTATGTGATACTGCtgcga

Function


GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU179622 True 567 lncRNA 0.43 1 18053409 18053975

Neighbor


gene id symbol gene type direction distance location
LOC103026658 LOC108425505,LOC107715025,LOC107671876,LOC106572368,LOC105022778 coding upstream 31412 17804083 ~ 18021997 (+)
LOC103044854 LOC103044854,LOC108425484 coding upstream 320888 17630771 ~ 17732521 (+)
sars sars,LOC107671868,LOC107697960 coding upstream 425820 17601124 ~ 17627589 (+)
LOC103023305 NA coding upstream 463684 17564407 ~ 17589725 (+)
fam50a fam50a coding upstream 491393 17543782 ~ 17562016 (+)
wdr63 NA coding downstream 23675 18077650 ~ 18125936 (+)
LOC111194038 NA coding downstream 159910 18213885 ~ 18214673 (+)
cyr61 cyr61,cef10 coding downstream 308740 18362715 ~ 18365465 (+)
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding downstream 685083 18739058 ~ 18768420 (+)
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding downstream 779374 18833349 ~ 18853525 (+)
G132806 NA non-coding upstream 21061 18031938 ~ 18032348 (+)
G132774 NA non-coding upstream 33266 18016022 ~ 18020143 (+)
G132770 NA non-coding upstream 89816 17962957 ~ 17963593 (+)
G132767 NA non-coding upstream 151387 17901273 ~ 17902022 (+)
G132752 NA non-coding upstream 279413 17773735 ~ 17773996 (+)
G132814 NA non-coding downstream 696 18054671 ~ 18055014 (+)
G132818 NA non-coding downstream 8653 18062628 ~ 18114558 (+)
G132837 NA non-coding downstream 83977 18137952 ~ 18139522 (+)
G132844 NA non-coding downstream 131402 18185377 ~ 18197642 (+)
G132846 NA non-coding downstream 183036 18237011 ~ 18238036 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 529056 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 543594 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 2315628 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 2587324 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 2655840 15364390 ~ 15397569 (+)
G133076 NA other downstream 989519 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 1293493 19347468 ~ 19360891 (+)
G133246 NA other downstream 2069415 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 2239188 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 2712941 20766916 ~ 20783861 (+)

Expression



Co-expression Network