CI01000012_00886127_00889703


Basic Information

Item Value
gene id CI01000012_00886127_00889703
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 885120 ~ 890337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_00886127_00889703.mRNA
GTATTAAAAGAGCCCTCGTACGCTTCTTGTAGCAAGCTCAGATTGACCTGAAGCATCTAGTGTGCGGTGCACTCTAATTTAGCCAAGTGTGAGAGGGGATTTTGTATGTGTGTATACTTGCCTGTCTCTTTAGGGCATGGACATTGCTCAACACCTGTTTCAATGATGTTAATTGTTGACATGTTCACACAGACCCAGACTGTTATTATGAGAAGGGGGTGATGGGAAGGCATGTTTAAAATCAGGGTGGAGATGTTGACAAACGTTTGTAGTGATGAGAAGAGGAATATCTAATCTAATGTGGAAAATACCTCATCACCAGAACCCTGACACAGACATTGGCAACATAACGTCAAGCCAAGAAACGGAGCCATTTATCATATATACATTTCCACATGCTTTTGCTCATGTTTTCTTGCATCACTCAGTCACAGGCACAAACAACTGTAGACTTGGTTAAACGTTCCTTGAAAATCTTCTCAAGTCAGTCCATTAAAAGTGCAGCATGTACACATTTGTACACTATTACTATTACAATTTGTGTCTAATGCTCACCAAGGCTGTATTTATTTGATCAAAATTCCAGTAAAAACACATTCTTTGTCTTATAGATGTTTAAAACAATACAGAAAATGAACTTTAACAAACACTTTTCCACAATGTAAAAGGCACTAGTTTCATATAACAACTCTCCTACACGTTCCAATAAAGAAAACAAGAATGCTGCAGTTATTCAGAGCGAAAGAAAAGTGAAATGAAGTAAAAACAAAACTGCAGTGGGTCATAAGAGGAGTGATGGTAACCATTCTCAAGCCTTTAAACTCAGGCCAAGTACTCATTATTACAAAACAACCCACTAGGAGAAAAACATCATTAACAGAGGGAGGGAGACGAGAACTAGTCAGTCATGAGACAGACTTTGGTTAACAATGCTGATTTATTTCTCTTTTACACTATGTTTTCATCCAACACCGAGGCAGATACACAGAACAGGGAAAAAAGAGGAAATGAGAGTGAAGAGGGTGTGTGGTGGAAAGAAAGGACGCTTCGCTATGGCATTTATTAACATTGTTGACCCTCTGGAGAGATGGAGGACCACGGTAATGATTACCCTCGGAAATGAAAAGCATTTCTCAGCAGGACAGACTGTGGCAGACAATATGTGTATGAGTTTGGAGACAGTAGTTCTGGGGATGTGCTGGAATCTTTATGAAAACCTAAACAGCCCATGTTCAGCTAGATTTTATGGTGCAGGAAAACAGTGGGCCGTCTGTACTCACTACAGTAGTAAACACACACCGATCCACACAAGCGGCAACGTGCATGAACACATGGATTTTACATCATGCTCTGCCATCATTACCCAAACTGTGAAAAACAAAACCCAGACGACTGAGGAACGTGCAGAGCAGATGTGAGCATGCTTTCCCACAGTGGGCGACCCCTACGTTGCCAACCACCTTCTGACGAGTGTGTGCGCGTGTTATCCACAATTTATTCACCTAAGAGGTAGTAATATGGGGAATAGAGTACAATTTGTGCCAAAATTATGGTTTGAATGGCCATCAGAGAGAGAGAGCGACAAAATGTGTGTTGTTGAGGGAGCATTTCTCAGGCGGTAGTGTTTGATCCACACAGGCTCATAAACCCGTTCCTCTCATGCCCAGCTAAAGCATCGCCAGTAAAAACACCATCACAATCCCTGCTTAGAGTCTCAGAGCCAAACTACTTAGAGCACTTGGCCTCATACCCACCCACCCACATACACACACACATACACACACACACACACACACACACGCACATACACACACAAACGTCCTGTTTCAGTGAGGAGTGTATCAGGATGGGAATACATGTCAGAACTGCCTAGAAAATTTCAGCTCCTACTTAGTTCCAAGACAAATTAAAAAGCTGATTGTTAAGGTAATTCTGACCAGTTTGAAGCGTTAGTGATAAATTAAAATGTTAATTTCTTCACTGAGGTACCAACACCTGTGAATAATGCACTTTAGGAAAGAGAGAGTGAGAGATACAAAAAGACAGAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_00886127_00889703.mRNA True 2052 mRNA 0.41 2 885120 890337

Neighbor

gene id symbol gene type direction distance location
CI01000012_00644021_00646785 NA coding upstream 238045 644021 ~ 647075 (+)
CI01000012_00593086_00594741 NA coding upstream 289655 592126 ~ 595465 (+)
CI01000012_00502185_00516358 NA coding upstream 368212 500151 ~ 516908 (+)
CI01000012_00318129_00318595 NA coding upstream 565702 318129 ~ 319418 (+)
CI01000012_00194370_00195347 HCAR1-3 coding upstream 689444 193903 ~ 195676 (+)
CI01000012_00979848_00986445 NA coding downstream 89511 979848 ~ 986745 (+)
CI01000012_00991831_01027918 NA coding downstream 100838 991175 ~ 1028035 (+)
CI01000012_01054663_01055748 NA coding downstream 164326 1054663 ~ 1058353 (+)
CI01000012_01060250_01062758 NA coding downstream 169848 1060185 ~ 1062758 (+)
CI01000012_01080380_01085038 NA coding downstream 190043 1080380 ~ 1085347 (+)
G68811 NA non-coding upstream 70256 814645 ~ 814864 (+)
G68804 NA non-coding upstream 79916 803834 ~ 805204 (+)
G68795 NA non-coding upstream 86698 798165 ~ 798422 (+)
G68771 NA non-coding upstream 109305 775180 ~ 775815 (+)
G68765 NA non-coding upstream 118443 765620 ~ 766677 (+)
G68894 NA non-coding downstream 76768 967105 ~ 1034619 (+)
G68919 NA non-coding downstream 84734 975071 ~ 975627 (+)
G68940 NA non-coding downstream 183648 1073985 ~ 1074235 (+)
G68972 NA non-coding downstream 293759 1184096 ~ 1191354 (+)
G68978 NA non-coding downstream 305470 1195807 ~ 1196018 (+)
G68725 NA other upstream 200264 683523 ~ 684856 (+)
G68660 NA other upstream 349167 535566 ~ 535953 (+)
G68282 NA other upstream 824588 26390 ~ 60532 (+)
G70029 NA other downstream 1732141 2622478 ~ 2631385 (+)
CI01000012_04424569_04425090 NA other downstream 3529902 4424569 ~ 4425756 (+)
CI01000012_04495631_04501066 NA other downstream 3608116 4495631 ~ 4501066 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 4286558 5176895 ~ 5180970 (+)

Expression


Co-expression Network