G133042


Basic Information

Item Value
gene id G133042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 18876679 ~ 18952450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU179893
tatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaaaattaaactccttaattacggcaacttttagactctttggcccttttttctgtgctagaaatgcgcaccctctccgcttttagactctttggccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcccgtttttctgcg
>TU179894
tatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaaaattaaactccttaattacggcaacttttagactctttggcccgtttttctgcgctagaaatgcgcactctctccgcttttagacttatttgccccgtttttctgcgctagaaatgcacactctctccgcttttagactctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179893 True 224 lncRNA 0.39 2 18876679 18877007
TU179894 False 209 lncRNA 0.37 2 18876679 18952450

Neighbor

gene id symbol gene type direction distance location
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding upstream 23154 18833349 ~ 18853525 (+)
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding upstream 108259 18739058 ~ 18768420 (+)
cyr61 cyr61,cef10 coding upstream 511214 18362715 ~ 18365465 (+)
LOC111194038 NA coding upstream 662006 18213885 ~ 18214673 (+)
wdr63 NA coding upstream 750743 18077650 ~ 18125936 (+)
LOC103025945 NA coding downstream 2239 18954689 ~ 18962846 (+)
LOC103045888 cntn3a.1,LOC108438208,LOC107696975,LOC107663068,LOC107705712,LOC107551535 coding downstream 82993 19035443 ~ 19195367 (+)
ttll9 ttll9 coding downstream 429862 19382312 ~ 19393378 (+)
LOC103042623 LOC103042623,LOC108438215 coding downstream 445725 19398175 ~ 19400544 (+)
sycp2 NA coding downstream 449405 19401855 ~ 19427830 (+)
G132996 NA non-coding upstream 99956 18776122 ~ 18776723 (+)
G132994 NA non-coding upstream 103074 18772391 ~ 18773605 (+)
G132983 NA non-coding upstream 160678 18711740 ~ 18716001 (+)
G132981 NA non-coding upstream 174495 18655259 ~ 18702184 (+)
G132948 NA non-coding upstream 233929 18642219 ~ 18642750 (+)
G133043 NA non-coding downstream 23954 18976404 ~ 18987771 (+)
G133077 NA non-coding downstream 91799 19044249 ~ 19045514 (+)
G133079 NA non-coding downstream 93540 19045990 ~ 19047682 (+)
G133154 NA non-coding downstream 368608 19321058 ~ 19321314 (+)
G133220 NA non-coding downstream 944047 19896497 ~ 19896705 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 1352326 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 1366864 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 3138898 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 3410594 15459862 ~ 15466085 (+)
fam131c fam131c other upstream 3479110 15364390 ~ 15397569 (+)
G133076 NA other downstream 91044 19043494 ~ 19044186 (+)
LOC103042214 LOC103042214 other downstream 395018 19347468 ~ 19360891 (+)
G133246 NA other downstream 1170940 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 1340713 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 1814466 20766916 ~ 20783861 (+)

Expression


Co-expression Network