LOC103042214 (LOC103042214)


Basic Information

Item Value
gene id LOC103042214
gene name LOC103042214
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 19347468 ~ 19360891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180106
cagtgtgtgtaggTAGAGTGGGCGCACGCGCACGGGCTCGCGGGTGGGTCTTCTTGTATGAAATCAGGACCCCCGCTCATTAGAGCTGCACACTGCTACAAGCCCCATCACTGCAGCTGTAGTATAACCGGGTATTTCAGCTCCTTCCAGCTTCTGCTGGGTTTGTTTACGCGGGGCACTAATTGCAGCGGCGCTGAGGGTTTGTTGCTCATTAGAGCGGCTGTTAAAGCGCCTATAAACTTTTATAAAATAGGCTGAAcgctaactgctgctgctgtgcgcGCGAGACACTCCCTGCAGCCCTCACTCAGGCGCGCGCGGCTTCACTGCTTCTTATAATAATATCTCTGAGAGTCTCACCTCCCAGTGCATTGGGGTCAGTcagctctctctttcctctcaggAGCTCCTCAGCTCCTCGCCTGCCCTCCTCTGAAGCTCTTCTTTTTCAGGGAGCTGACCATGTAGGAGCTCCAGCCGGCTGTTCCTTCAAAAAAACCCGGGAACTTTCCTTGTAGTTAAGATAACAGGGGTGATAAAGGCAGAGCTCGTGCATGGCAGCTTTAACACTGGTATTTTTACCTTTACCTGCGTAATTTTTTCACTCATCTGAGTGAAAAAGCACTGAGGCATGGCGGGTCTTCTGCTCTGTGTCCGGCTGTGGGTAATTCTGAGTTTAATCAGCGTTTTCACTGAAGATCATCGTTGTGGCCAGGAGACACCAAGAACGCCCAGCTGCAGTCATTTGAACTCTCCAATTCTGCTGACCCAAAGCAGAGTTCCAGCCACTACAAAAGTGCAGAGACCCTGCTGAGTAAAGAGGCTCAGGCTCATCAGAGACCCAGACGATGCACATGCTTTTCCTACAGAGACAAGGAGTGTGTATACTACTGTCACCTGGACATCATCTGGATCAATACGCCAGAGAGAACAGTTCCTTACGGCATGTCCAGCTATCGCGGCTCTCAGCGGGTCAGGCGCTCCAGTGGCGGCGCAGCAGCAGTAGAACATCAGCGTTGTACCTGTAGAGACCAGAATGACACACGGTGTCATAACTTCTGTGAAACGAGATGTAATCACCAAAGGAACAGCCATGATGATCTCAACACAGAAAGGGCATCATACAGACCCTAAGGAGGACAAGGCTTCTGGTCTCACCATCTTTGAGAACATCAGACTCCGCTTAATGACCTTTAAGGTTCATCTGGCCTTTTTTCTAACAGCTGCATTTGAAGTCATCTCTCTGAAGAAAAGCTCTTCTGAAGGAAAGGCTGTGAGGGATGACCACTGTGAAGTGAGGACCTGAACCCTGACTCTGACTCCTGGACGATCTATGCGCTGCCATTATTTCAAATGGGCTGAACTGTGCCAGAAAGGAAGTGACCCCAAAATCCACATATGTTTGTTTCATTATCTTGAGCTCTAATCCTTGTTTCAGTGGAAACTTTGTTTTGTGGGACGTTGGAATGTTGCTTTAATCACTTGTGCACCTGATACCAAAAAACTCTATTTATGGACAATGGGCATGATCTGAACATGGAAGGGCAGAACAACGTTAGGCCTGGCAACACTGTTAGGCCTGAAAGAAAGGACTGCACAATGATAAAATGCTGGACCTCAGATATCTTAAAGGAATCTATAACTTGTATATTATTGTTTCACATGACTACCATGACATGACATTTTTCCTACTAAAATACTCCCTTTTGTTTTTAAGAGACCTCTTCTTAAACTATAT
>XM_007234649.3
CATTAGAGCTGCACACTGCTACAAGCCCCATCACTGCAGCTGTAGTATAACCGGGTATTTCAGCTCCTTCCAGCTTCTGCTGGGTTTGTTTACGCGGGGCACTAATTGCAGCGGCGCTGAGGGTTTGTTGCTCATTAGAGCGGCTGTTAAAGCGCCTATAAACTTTTATAAAATAGGCTGAAcgctaactgctgctgctgtgcgcGCGAGACACTCCCTGCAGCCCTCACTCAGGCGCGCGCGGCTTCACTGCTTCTTATAATAATATCTCTGAGAGTCTCACCTCCCAGTGCATTGGGGTCAGTcagctctctctttcctctcaggAGCTCCTCAGCTCCTCGCCTGCCCTCCTCTGAAGCTCTTCTTTTTCAGGGAGCTGACCATGTAGGAGCTCCAGCCGGCTGTTCCTTCAAAAAAACCCGGGAACTTTCCTTGTAGTTAAGATAACAGGGGTGATAAAGGCAGAGCTCGTGCATGGCAGCTTTAACACTGGTATTTTTACCTTTACCTGCGTAATTTTTTCACTCATCTGAGTGAAAAAGCACTGAGGCATGGCGGGTCTTCTGCTCTGTGTCCGGCTGTGGGTAATTCTGAGTTTAATCAGCGTTTTCACTGAAGCCAGATCATCGTTGTGGCCAGGAGACACCAAGAACGCCCAGCTGCAGTCATTTGAACTCTCCAATTCTGCTGACCCAAAGCAGAGTTCCAGCCACTACAAAAGTGCAGAGACCCTGCTGAGTAAAGAGGCTCAGGCTCATCAGAGACCCAGACGATGCACATGCTTTTCCTACAGAGACAAGGAGTGTGTATACTACTGTCACCTGGACATCATCTGGATCAATACGCCAGAGAGAACAGTTCCTTACGGCATGTCCAGCTATCGCGGCTCTCAGCGGGTCAGGCGCTCCAGTGGCGGCGCAGCAGCAGTAGAACATCAGCGTTGTACCTGTAGAGACCAGAATGACACACGGTGTCATAACTTCTGTGAAACGAGATGTAATCACCAAAGGAACAGCCATGATGATCTCAACACAGAAAGGGCATCATACAGACCCTAAGGAGGACAAGGCTTCTGGTCTCACCATCTTTGAGAACATCAGACTCCGCTTAATGACCTTTAAGGTTCATCTGGCCTTTTTTCTAACAGCTGCATTTGAAGTCATCTCTCTGAAGAAAAGCTCTTCTGAAGGAAAGGCTGTGAGGGATGACCACTGTGAAGTGAGGACCTGAACCCTGACTCTGACTCCTGGACGATCTATGCGCTGCCATTATTTCAAATGGGCTGAACTGTGCCAGAAAGGAAGTGACCCCAAAATCCACATATGTTTGTTTCATTATCTTGAGCTCTAATCCTTGTTTCAGTGGAAACTTTGTTTTGTGGGACGTTGGAATGTTGCTTTAATCACTTGTGCACCTGATACCAAAAAACTCTATTTATGGACAATGGGCATGATCTGAACATGGAAGGGCAGAACAACGTTAGGCCTGGCAACACTGTTAGGCCTGAAAGAAAGGACTGCACAATGATAAAATGCTGGACCTCAGATATCTTAAAGGAATCTATAACTTGTATATTATTGTTTCACATGACTACCATGACATGACATTTTTCCTACTAAAATACTCCCTTTTGTTTTTAAGAGACCTCTTCTTAAACTATATGTATCCTTAACATGCAGTGTTCAGCTACATTAATATTACCAGGCTGAAGAgacccaaatctgatttgaaccAGATTTTAATCACTTTCACATGTGTTCATAGATCAGATACAAATcccatttgtgaatgtgaatggtcagattggattttgtgtgtatttttgcttGTAAGCATGTGCTTAGTTCTGTCATCATCAACTAGTGCTAGTGTTCTGCCAAATTCCAACACCACCACAGAATATAACTACAATGACTTACAATCACAGCTTCTTTTGTTTCTGATTATGAGTTTATGTTAATACAATGAACTACAGAACATCGCTTAAGAAGAGTTATGACCTTATTGTATACCCTGCGAAAGGCTTTGCTACCTTACAGCCCAtcaatagtctattttcacaccttgccccacgctgttaaaatagtgtgtTCAAGTAAGTTTTTGccgtgttgctattttggcagcgaaaaacacaggtgctctacTGACTGATATTTACCTAGACAGCAGTTAATCGTCAGAATCCATTCCTATAGATGTACACTCCcgctcattaaaaaaaaa

Function

NR:

description
endothelin-3-like

GO: NA

KEGG:

id description
K05227 EDN3; endothelin-3

RNA

RNA id representative length rna type GC content exon number start site end site
TU180106 False 1738 lncRNA 0.48 4 19347468 19360327
XM_007234649.3 True 2229 mRNA 0.45 4 19347545 19360891

Neighbor

gene id symbol gene type direction distance location
LOC103045888 cntn3a.1,LOC108438208,LOC107696975,LOC107663068,LOC107705712,LOC107551535 coding upstream 152101 19035443 ~ 19195367 (+)
LOC103025945 NA coding upstream 384622 18954689 ~ 18962846 (+)
LOC103025641 NA coding upstream 424466 18915385 ~ 18923002 (+)
LOC103025011 abce1,LOC108441533,LOC108275804,LOC107653221 coding upstream 493943 18833349 ~ 18853525 (+)
LOC103024383 LOC108441536,LOC108275807,LOC107550164,LOC107694430,LOC105904845 coding upstream 579048 18739058 ~ 18768420 (+)
ttll9 ttll9 coding downstream 21421 19382312 ~ 19393378 (+)
LOC103042623 LOC103042623,LOC108438215 coding downstream 37284 19398175 ~ 19400544 (+)
sycp2 NA coding downstream 40964 19401855 ~ 19427830 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding downstream 547833 19908724 ~ 20132876 (+)
LOC103028561 LOC108429303 coding downstream 774642 20135533 ~ 20245691 (+)
G133154 NA non-coding upstream 26154 19321058 ~ 19321314 (+)
G133079 NA non-coding upstream 299786 19045990 ~ 19047682 (+)
G133077 NA non-coding upstream 301954 19044249 ~ 19045514 (+)
G133043 NA non-coding upstream 359697 18976404 ~ 18987771 (+)
G133066 NA non-coding upstream 378949 18952025 ~ 18968519 (+)
G133220 NA non-coding downstream 535606 19896497 ~ 19896705 (+)
G133223 NA non-coding downstream 542842 19903733 ~ 19904036 (+)
G133236 NA non-coding downstream 588053 19948944 ~ 19954333 (+)
G133234 NA non-coding downstream 592265 19953156 ~ 19958908 (+)
G133255 NA non-coding downstream 926055 20286946 ~ 20287212 (+)
G133076 NA other upstream 303282 19043494 ~ 19044186 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 1823115 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 1837653 17506451 ~ 17509815 (+)
LOC103031494 NA other upstream 3609687 15730897 ~ 15737781 (+)
ddost ddost,LOC107673085,LOC107687429 other upstream 3881383 15459862 ~ 15466085 (+)
G133246 NA other downstream 762499 20123390 ~ 20124548 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other downstream 932272 20293163 ~ 20495831 (+)
tcea2 tcea2 other downstream 1406025 20766916 ~ 20783861 (+)
G133501 NA other downstream 1647852 21008743 ~ 21015058 (+)
G133502 NA other downstream 1649016 21009907 ~ 21015916 (+)

Expression


Co-expression Network