LOC103029397 (ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301)


Basic Information

Item Value
gene id LOC103029397
gene name ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 20293163 ~ 20495831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180232
aatataatttaaatatgtttttttaataacttatATTGTTTAAACACATCTTTATTGATTTTGACCTTGCAACCTCATTcaacaattatatatttttttcctccctccacccaacccaaaaaatatatatatattttagacGAGTCAAACGAGAGCAGGaggtaaatctacacagatttctctcctgaaaactgtttatttgggtgagtaaagtgctacCATTcaatttatagtaagcttaccatagatttacagatttcatCTAAAGctggaacattagcattagcggttaactgctagcggttagcggctaatttcACCCAAAAGCCACCctgagctagcactgtggttagcggtcaatgctaatgctgctccagcagtgccacctggggttagcagcaggttacaggccgatagtactcacctctggaagaccaaaaagctagcgctcagcgcagttagcagctattactaatactactggagaattaaactgaaactcttttataacgtagAAGtacaatg
>XM_007250757.3
agagagaggacagaacagaacagaactggAGCGGAGGGCAGAAGCTCCACCAACTCGCCTGGATACACACTTCTCACTCATCGCTCCTCCAGGGCTTTTTATTCACAGACGCTGTCAGTCGTGAGAATGGACGAGCTACAGGATGTGCAATTGACTGAGATCAAGCCTCTTCTGACAGACAAGAATGGCCGAAACTTCCAGGACTTTGACTGTCAAGAACATGATATCGAGACTCCCCATGGAGTTCTTCATGTCACTTTGAGAGGAACACCCAAAGGCAACCGTCCCGTCATCCTCACCTACCATGACATCGGCCTCAACCATAAGTCATGCTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACGCAGCACTTTGCCGTGGTCCATGTGGATGCTCCAGGTCAGCAGGAGAACGCACCACCTTTTCCAAGCGGGTATCAGTACCCAACAATGGATGAGCTGGCTGAGATGCTGCCATCAGTGCTGACTCAGCTCAAGATTAACAGTGTGATTGGCATTGGGGTGGGTGCAGGAGCCTATATCCTCACCAGACTGGCTCTGAATCAGTCTACTCTGGTGGAGGGTCTGGTTCTCATCAATGTGGATCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCAAAGtTATCTGGGTGGACCAGCAATCTTGTGGACATTGTGATGGGGCATCATTTTAGCACAGACGAGCTGACGGAGAACCAAGAGATCATTCAGACATACCGTCTGCACATCGCTCAGGACATCAACCAGGACAACCTTGCACTCTTCTGCAACTCCTACAATGGccGCCGAGACTTAGAGATTGAGAGACCCATCCTAGGGATTAATGAGGAAACAGTCAACACCCTGAAGTGTCCCGCACTGCTGGTAGTAGGAGACACGTCCCCAGCTGTGGAAGCAGTGgtTGAGTGCAACTCAAGGCTAAATCCCACAAAGACAACCCTGCTTAAGATGGCAGACTGTGGTGGATTACCTCAAGTTGTTCAACCTGGTAAACTTGCTGAGGCCTTCAAGTACTTTGTCCAGGGAATGGGTTACATCCCCCATGTGCTCCTCAGCCACCTGAGCAGCGAATCAGTGCCCACTGCAAGCATGACCCGTCTGGCACGCTCCCGCACCCACTCTGCGTCCAGCGTAAGCTCGGTGGAAGGCGTGCGCAGCCGCACTCACACCAGCTCCCAAGCAGAGGGCGCCGTCGCCGGACACGACAACCAGGCCAGACCACAAACCATGGAGGTGTCCTGCTAAAGCCTGTCTCtcgcacacttttttttttttttgtcttttttctttcttcaagGGGGAGTTTCACTTACAGGCTCAAAATATTAGCATCATTTGCACCTGGAGATAAAAAACACGCACAGCGAGTCGCCTTTAAAGGTCTGACAGTATGGATTCAAGTCTTTCCAGTGCTGAAACAGTGAAAGGAACCAGAGCTGAAGAGAAATCAAGTCAATTCCCTCTGCAGCCACAAACTCCTTTTAATGAGCAAGTTCAAATATCTTCCTGCTTCACTTTACAGTTTAGCAGACAGATTTGTTGTTTATTCACTTATCTATACATACACAAAGAAAAATCATGCACTGACCGACCACTGGTTCCTGTTGCTACTTCTGGAAATACTTCTAGAACGAATCCTTACTCTAGATTGAAGCATTTTTGTTCTGCAAAGTGCACTGTTCACCATGAAAATGATGCTGAAATTTAGAGCATAAAAGTGAAATCtcccttttatttctaaaaccaGAGAGTTCTGGTGTAATGAAGGGATGCAAAGTATGACTATTTGTACTCAAGACATGTTTAAACTATTGAAATGCAGTTATATTTTACAGTCCGTTCACAGACCTTCTCTTCCTTCACTCCCACGTCTTCGTGTGTTTTTACTCCTCCCTGCCTAGAAGGTCTTAGTCTACATTTCTCTACAAAAATGGGATAATCTTCAGTCTTTGTCCAGGCACCGTCCACATGTATccagatagatttttttttttttaggcttgtTTTAGGCTTCTGTCTACATGAAAACAGTGTACAATTAGTGtacaatattttttggactataaggcacactaccaaagaatgtctattttctgctctattttcaaacataaaacgCATTTTGTGCGACACTAGTATTAGGAGCagaggtgttgccatgttttccttctaaatttagctgtaaagctaagctaagtaaacaaaaataaaaaaaaa
>XM_007250758.3
agagaggacagaacagaacagaactggAGCGGAGGGCAGAAGCTCCACCAACTCGCCTGGATACACACTTCTCACTCATCGCTCCTCCAGGGCTTTTTATTCACAGACGCTGTCAGTCGTGAGAATGGACGAGCTACAGGATGTGCAATTGACTGAGATCAAGCCTCTTCTGACAGACAAGAATGGCCGAAACTTCCAGGACTTTGACTGTCAAGAACATGATATCGAGACTCCCCATGGAGTTCTTCATGTCACTTTGAGAGGAACACCCAAAGGCAACCGTCCCGTCATCCTCACCTACCATGACATCGGCCTCAACCATAAGTCATGCTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACGCAGCACTTTGCCGTGGTCCATGTGGATGCTCCAGGTCAGCAGGAGAACGCACCACCTTTTCCAAGCGGGTATCAGTACCCAACAATGGATGAGCTGGCTGAGATGCTGCCATCAGTGCTGACTCAGCTCAAGATTAACAGTGTGATTGGCATTGGGGTGGGTGCAGGAGCCTATATCCTCACCAGACTGGCTCTGAATCAGTCTACTCTGGTGGAGGGTCTGGTTCTCATCAATGTGGATCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCAAAGtTATCTGGGTGGACCAGCAATCTTGTGGACATTGTGATGGGGCATCATTTTAGCACAGACGAGCTGACGGAGAACCAAGAGATCATTCAGACATACCGTCTGCACATCGCTCAGGACATCAACCAGGACAACCTTGCACTCTTCTGCAACTCCTACAATGGccGCCGAGACTTAGAGATTGAGAGACCCATCCTAGGGATTAATGAGGAAACAGTCAACACCCTGAAGTGTCCCGCACTGCTGGTAGTAGGAGACACGTCCCCAGCTGTGGAAGCAGTGgtTGAGTGCAACTCAAGGCTAAATCCCACAAAGACAACCCTGCTTAAGATGGCAGACTGTGGTGGATTACCTCAAGTTGTTCAACCTGGTAAACTTGCTGAGGCCTTCAAGTACTTTGTCCAGGGAATGGGTTACATGCCCACTGCAAGCATGACCCGTCTGGCACGCTCCCGCACCCACTCTGCGTCCAGCGTAAGCTCGGTGGAAGGCGTGCGCAGCCGCACTCACACCAGCTCCCAAGCAGAGGGCGCCGTCGCCGGACACGACAACCAGGCCAGACCACAAACCATGGAGGTGTCCTGCTAAAGCCTGTCTCtcgcacacttttttttttttttgtcttttttctttcttcaagGGGGAGTTTCACTTACAGGCTCAAAATATTAGCATCATTTGCACCTGGAGATAAAAAACACGCACAGCGAGTCGCCTTTAAAGGTCTGACAGTATGGATTCAAGTCTTTCCAGTGCTGAAACAGTGAAAGGAACCAGAGCTGAAGAGAAATCAAGTCAATTCCCTCTGCAGCCACAAACTCCTTTTAATGAGCAAGTTCAAATATCTTCCTGCTTCACTTTACAGTTTAGCAGACAGATTTGTTGTTTATTCACTTATCTATACATACACAAAGAAAAATCATGCACTGACCGACCACTGGTTCCTGTTGCTACTTCTGGAAATACTTCTAGAACGAATCCTTACTCTAGATTGAAGCATTTTTGTTCTGCAAAGTGCACTGTTCACCATGAAAATGATGCTGAAATTTAGAGCATAAAAGTGAAATCtcccttttatttctaaaaccaGAGAGTTCTGGTGTAATGAAGGGATGCAAAGTATGACTATTTGTACTCAAGACATGTTTAAACTATTGAAATGCAGTTATATTTTACAGTCCGTTCACAGACCTTCTCTTCCTTCACTCCCACGTCTTCGTGTGTTTTTACTCCTCCCTGCCTAGAAGGTCTTAGTCTACATTTCTCTACAAAAATGGGATAATCTTCAGTCTTTGTCCAGGCACCGTCCACATGTATccagatagatttttttttttttaggcttgtTTTAGGCTTCTGTCTACATGAAAACAGTGTACAATTAGTGtacaatattttttggactataaggcacactaccaaagaatgtctattttctgctctattttcaaacataaaacgCATTTTGTGCGACACTAGTATTAGGAGCagaggtgttgccatgttttccttctaaatttagctgtaaagctaagctaagtaaacaaaaataaaaaaaaa
>XM_007250759.3
ctctctctctctctcacgcttgATCTCGCTCCTTCTCTGGatctggatctctctctctttcgtctTTCTCCCTCTGGATCAATAAAATGACGACAGAACTGGCTCTTCAACAGATCACTTGTGAGATTATcggtgtgGAACATGATATCGAGACTCCCCATGGAGTTCTTCATGTCACTTTGAGAGGAACACCCAAAGGCAACCGTCCCGTCATCCTCACCTACCATGACATCGGCCTCAACCATAAGTCATGCTTCAACACACTGTTTAACTTCGAGGACATGCAGGAGATCACGCAGCACTTTGCCGTGGTCCATGTGGATGCTCCAGGTCAGCAGGAGAACGCACCACCTTTTCCAAGCGGGTATCAGTACCCAACAATGGATGAGCTGGCTGAGATGCTGCCATCAGTGCTGACTCAGCTCAAGATTAACAGTGTGATTGGCATTGGGGTGGGTGCAGGAGCCTATATCCTCACCAGACTGGCTCTGAATCAGTCTACTCTGGTGGAGGGTCTGGTTCTCATCAATGTGGATCCCTGTGCAAAGGGCTGGATGGACTGGGCTGCCTCAAAGtTATCTGGGTGGACCAGCAATCTTGTGGACATTGTGATGGGGCATCATTTTAGCACAGACGAGCTGACGGAGAACCAAGAGATCATTCAGACATACCGTCTGCACATCGCTCAGGACATCAACCAGGACAACCTTGCACTCTTCTGCAACTCCTACAATGGccGCCGAGACTTAGAGATTGAGAGACCCATCCTAGGGATTAATGAGGAAACAGTCAACACCCTGAAGTGTCCCGCACTGCTGGTAGTAGGAGACACGTCCCCAGCTGTGGAAGCAGTGgtTGAGTGCAACTCAAGGCTAAATCCCACAAAGACAACCCTGCTTAAGATGGCAGACTGTGGTGGATTACCTCAAGTTGTTCAACCTGGTAAACTTGCTGAGGCCTTCAAGTACTTTGTCCAGGGAATGGGTTACATCCCCCATGTGCTCCTCAGCCACCTGAGCAGCGAATCAGTGCCCACTGCAAGCATGACCCGTCTGGCACGCTCCCGCACCCACTCTGCGTCCAGCGTAAGCTCGGTGGAAGGCGTGCGCAGCCGCACTCACACCAGCTCCCAAGCAGAGGGCGCCGTCGCCGGACACGACAACCAGGCCAGACCACAAACCATGGAGGTGTCCTGCTAAAGCCTGTCTCtcgcacacttttttttttttttgtcttttttctttcttcaagGGGGAGTTTCACTTACAGGCTCAAAATATTAGCATCATTTGCACCTGGAGATAAAAAACACGCACAGCGAGTCGCCTTTAAAGGTCTGACAGTATGGATTCAAGTCTTTCCAGTGCTGAAACAGTGAAAGGAACCAGAGCTGAAGAGAAATCAAGTCAATTCCCTCTGCAGCCACAAACTCCTTTTAATGAGCAAGTTCAAATATCTTCCTGCTTCACTTTACAGTTTAGCAGACAGATTTGTTGTTTATTCACTTATCTATACATACACAAAGAAAAATCATGCACTGACCGACCACTGGTTCCTGTTGCTACTTCTGGAAATACTTCTAGAACGAATCCTTACTCTAGATTGAAGCATTTTTGTTCTGCAAAGTGCACTGTTCACCATGAAAATGATGCTGAAATTTAGAGCATAAAAGTGAAATCtcccttttatttctaaaaccaGAGAGTTCTGGTGTAATGAAGGGATGCAAAGTATGACTATTTGTACTCAAGACATGTTTAAACTATTGAAATGCAGTTATATTTTACAGTCCGTTCACAGACCTTCTCTTCCTTCACTCCCACGTCTTCGTGTGTTTTTACTCCTCCCTGCCTAGAAGGTCTTAGTCTACATTTCTCTACAAAAATGGGATAATCTTCAGTCTTTGTCCAGGCACCGTCCACATGTATccagatagatttttttttttttaggcttgtTTTAGGCTTCTGTCTACATGAAAACAGTGTACAATTAGTGtacaatattttttggactataaggcacactaccaaagaatgtctattttctgctctattttcaaacataaaacgCATTTTGTGCGACACTAGTATTAGGAGCagaggtgttgccatgttttccttctaaatttagctgtaaagctaagctaagtaaacaaaaataaaaaaaaa

Function

symbol description
ndrg3 Predicted to be involved in signal transduction. Located in cytoplasm.

NR:

description
protein NDRG3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180232 False 525 lncRNA 0.38 3 20349838 20495831
XM_007250757.3 True 2250 mRNA 0.46 17 20293163 20399714
XM_007250758.3 False 2209 mRNA 0.46 16 20293165 20399714
XM_007250759.3 False 2171 mRNA 0.46 15 20365454 20399714

Neighbor

gene id symbol gene type direction distance location
LOC103029094 LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192 coding upstream 11794 20253247 ~ 20281369 (+)
LOC103028561 LOC108429303 coding upstream 47472 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 160287 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 865333 19401855 ~ 19427830 (+)
LOC103042623 LOC103042623,LOC108438215 coding upstream 892619 19398175 ~ 19400544 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 676126 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 1283733 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 1374626 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 1428504 21924335 ~ 21992497 (+)
LOC103042077 NA coding downstream 1887611 22383442 ~ 22390535 (+)
G133255 NA non-coding upstream 5951 20286946 ~ 20287212 (+)
G133234 NA non-coding upstream 334255 19953156 ~ 19958908 (+)
G133236 NA non-coding upstream 338830 19948944 ~ 19954333 (+)
G133223 NA non-coding upstream 389127 19903733 ~ 19904036 (+)
G133220 NA non-coding upstream 396458 19896497 ~ 19896705 (+)
G133293 NA non-coding downstream 131989 20627820 ~ 20628091 (+)
G133300 NA non-coding downstream 158546 20654377 ~ 20663095 (+)
LOC111194107 NA non-coding downstream 158605 20654436 ~ 20659011 (+)
LOC111194108 NA non-coding downstream 164232 20660063 ~ 20663085 (+)
G133438 NA non-coding downstream 247127 20742958 ~ 20791918 (+)
G133246 NA other upstream 168615 20123390 ~ 20124548 (+)
LOC103042214 LOC103042214 other upstream 932272 19347468 ~ 19360891 (+)
G133076 NA other upstream 1248977 19043494 ~ 19044186 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 2768810 17479938 ~ 17524353 (+)
snrpg snrpg other upstream 2783348 17506451 ~ 17509815 (+)
tcea2 tcea2 other downstream 271085 20766916 ~ 20783861 (+)
G133501 NA other downstream 512912 21008743 ~ 21015058 (+)
G133502 NA other downstream 514076 21009907 ~ 21015916 (+)
G133503 NA other downstream 515899 21011730 ~ 21017977 (+)
G133509 NA other downstream 573485 21069316 ~ 21074051 (+)

Expression


Co-expression Network