G133257


Basic Information

Item Value
gene id G133257
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 20408652 ~ 20440745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180236
gaaaaaaataatcaaaaaaacacaaacgtTCGCTCTCACACGTACAAGCTTGATCTGGGAAAAGCTCTTCCCTCGTCTTTTAGTTGATTTAAAGCCTCCTCTCTCCGCTTCATCCGTTCTTCTGCCGTGTCGTTCTGTAAAATTAGTCCCatgtgagggaaaaaaaaaagcaaaaacatgaaaacagtcAACTTGAAGAAGACTCAGTAGTGGCCTGAGGACTATAAATAGATGCCCTCCCCCCAGAGCTCAGTGTAGATATACATCAGTGCTGACAGTGctgagtagttttttttttttttccagcacgTAGAACCATGGTGcatgttttttagtttgttttttgccTTCTTTTGCTCTCCTCTACGGGTGGGCCTTTAGACACGTACAGGACGTGCTTCAGGATCTCTCTCAGAGCTGCTAGGCTGGATCTCAGGGCTGCTGGACCAGTCTGCGGTAGTGGGGCATGACCTTACTATCAGGCAGGTAGAGGGCCATCTCTAGAGCTACCAGCACAGTGAACTCGAACGAGATCAGCTCCCGCCGGCTGATACGGAACCTCTCCTCCAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180236 True 572 lncRNA 0.47 2 20408652 20440745

Neighbor

gene id symbol gene type direction distance location
LOC103029094 LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192 coding upstream 127283 20253247 ~ 20281369 (+)
LOC103028561 LOC108429303 coding upstream 162961 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 275776 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 980822 19401855 ~ 19427830 (+)
LOC103042623 LOC103042623,LOC108438215 coding upstream 1008108 19398175 ~ 19400544 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 731212 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 1338819 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 1429712 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 1483590 21924335 ~ 21992497 (+)
LOC103042077 NA coding downstream 1942697 22383442 ~ 22390535 (+)
G133259 NA non-coding upstream 27478 20379432 ~ 20381174 (+)
G133255 NA non-coding upstream 121440 20286946 ~ 20287212 (+)
G133234 NA non-coding upstream 449744 19953156 ~ 19958908 (+)
G133236 NA non-coding upstream 454319 19948944 ~ 19954333 (+)
G133223 NA non-coding upstream 504616 19903733 ~ 19904036 (+)
G133269 NA non-coding downstream 11418 20452163 ~ 20552471 (+)
G133277 ccm2l,LOC106566342,LOC102778549 non-coding downstream 48898 20489643 ~ 20492524 (+)
G133293 NA non-coding downstream 187075 20627820 ~ 20628091 (+)
G133300 NA non-coding downstream 213632 20654377 ~ 20663095 (+)
LOC111194107 NA non-coding downstream 213691 20654436 ~ 20659011 (+)
G133246 NA other upstream 284104 20123390 ~ 20124548 (+)
LOC103042214 LOC103042214 other upstream 1047761 19347468 ~ 19360891 (+)
G133076 NA other upstream 1364466 19043494 ~ 19044186 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 2884299 17479938 ~ 17524353 (+)
tcea2 tcea2 other downstream 326171 20766916 ~ 20783861 (+)
G133501 NA other downstream 567998 21008743 ~ 21015058 (+)
G133502 NA other downstream 569162 21009907 ~ 21015916 (+)
G133503 NA other downstream 570985 21011730 ~ 21017977 (+)
G133509 NA other downstream 628571 21069316 ~ 21074051 (+)

Expression


Co-expression Network