tcea2 (tcea2)


Basic Information

Item Value
gene id tcea2
gene name tcea2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 20766916 ~ 20783861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180473
AGGTTCAGACACGTAGCGCAGATGAACCGATGACCACCTTTGTGCTGTGCAACGACTGTGGCAACCGGTGGAAGTTTTGCTGAGGAGTGCCGGAATTCTTTGTGCTTTGTGTAAAGAAGTGACAAAAATAATGAAGTgaggtactttttttttttggaaaaatgtcaTTTCTTTTTATACCCATTTCACAgctttgtaatatatatttggtGTGCATATTGCTAATTATGCAAATCTTAGGCACTTgatgtaaataattttattttgtattattattattttttttcttttcttttctactGGAACTGTATCCATTGCCTTTAAGCGTTCTGACTCCAGGTTAGCATTAGCTCGTTCAGTACTGCTCTTGCCTAAGATGAAGCACTCTGTGCCTTTTTCTGCGCTTTTTGGTGCCACGATTGTCTTTGCTTAAAGATTTGTACTCATTTCTGCTGCACATTTAGTGGGTTGCAACTGTGCTAGAGTGTTGTAGATATGCATAAAGCTGATTATGcatttgttttgatttatttgtggGGACACTTTCTTTGGACTGCTCATAGCAGACGATTTGCCAATTGTCAATAAACCTTCAAAAAGGGCAGGTAATATTTCTAAAGAATAATCCAGCACTTAagctttattaatttttttcttttttttcttttggctcTAACTATAATCTACAATTTGCCAACAGTTTGATAGTTGGAGTAGATAGTAGATCATTTTGAAGGTCTGTAGATAATCTGTAGATCACTTATAGGAGATCGTTCAATATAAAGTGgggcctctttttttttttgaattatGTGTGAGCTGCTTTTTTTTCAGAAGTATATTTCAAAAGTCTTAATATAGAAAGGTTTAGTGCTAGAAGATGTTCTAGTAGATTCAAGTCTCCCTTTTGAGAGGACCTACGTACGCAGATGTAAGAACATCACAGTGGGTTTGATTTGATcatgtgtattatatatatgaaattgtGGACCAGTctcattaaaaaattataatcagACA
>XM_007250763.3
tttcccacaattctCCAAACCACAACAGACGAGCCCTGCGAAAAAGGCTGTGGATTCAACTCATTCAGACaccgagagcgagagagaaaaacacgGGCGTGTTTCCTTAGTGACACTTTAAATGGAGTTAACGTTACGAGCTTAGGCTGCAGCAGACAGGGGAGCTTTTAAAGATGGTGAAAGACCAAGAAGTGGAGCGCATCGCGAAGAAGCTGGACAAAATGGTGCAGAAGGAAAACACGGATGGTGCCTTAGACTTGCTGAAGGAACTGAAGAACATGAAAATGTCACTGGAGACCCTGCAGtCCACGCGGATTGGCATGTCCGTGAATGCAGTGAGGAAGCAGAGCTCAGATGACGAGGTGCAGTCTCTGGCCAAATCGCTCATCAAAGCTTGGAAGAAGCTGCTTGATGGTGCTGAGGGCAAGTCAGAAGAGAAGAACAAGGGAGGACCCTCACTTCAATCATctacatcatcatcaacaacatCGTCTAAAGACAGTCCTGGGTCTAGTGACAGCAAGAAACCAGAAACACCAAAGACTCCCACCACACCTACAACTCCTACAACCCCCAAGTTCACCTCCTTTCCCCCTGTTCCCGTCACCACCGACAGCGTGCGAACCAAGTGCAGAGAGCTGCTGGTTGCGGCCCTGCAGACAGATGatgatTACAAAAATATTGGATCGGATTGTGATACATTGGCCGCAGAGATTGAAGACTATATCTATAAGGAGTTTAAGTCCACTGATATGAAGTATAAGACGAGACTGAGGAGCCGCATCTCCAACCTTAAAGACCAGAAGAACCCTGACCTGCGCCGCAATGTTCTATGTGGCAACATATCTACCGAACGGATTGCCACCATGACggcagagGAGATGGCAAGTGCGGAGCTGAAAGAGATGAGAAAGGCTCTGACTAAGGAATCCATTCGGGAACATCAGCTCTCCAAAGTGGGCGGCACCGAGACCGATATGTTCATTTGTGGAAAGTGCAAGGGCAAGAAGTGCACCTATACCCAGGTTCAGACACGTAGCGCAGATGAACCGATGACCACCTTTGTGCTGTGCAACGACTGTGGCAACCGGTGGAAGTTTTGCTGAGGAGTGCCGGAATTCTTTGTGCTTTGTGTAAAGAAGTGACAAAAATAATGAAGTgaggtacttttttttttttttttttttttttttttttgggaaaaatgtcaTTTCTTTTTATACCCATTTCACAgctttgtaatatatatttggtGTGCATATTGCTAATTATGCAAATCTTAGGCACTTgatgtaaataattttattttgtattattattattttttttcttttcttttctactGGAACTGTATCCATTGCCTTTAAGCGTTCTGACTCCAGGTTAGCATTAGCTCGTTCAGTACTGCTCTTGCCTAAGATGAAGCACTCTGTGCCTTTTTCTGCGCTTTTTGGTGCCACGATTGTCTTTGCTTAAAGATTTGTACTCATTTCTGCTGCACATTTAGTGGGTTGCAACTGTGCTAGAGTGTTGTAGATATGCATAAAGCTGATTATGcatttgttttgatttatttgtggGGACACTTTCTTTGGACTGCTCATAGCAGACGATTTGCCAATTGTCAATAAACCTTCAAAAAGGGCAGGTAATATTTCTAAAGAATAATCCAGCACTTAagctttattaatttttttcttttttttcttttggctcTAACTATAATCTACAATTTGCCAACAGTTTGATAGTTGGAGTAGATAGTAGATCATTTTGAAGGTCTGTAGATAATCTGTAGATCACTTATAGGAGATCGTTCAATATAAAGTGgggcctctttttttttttgaattatGTGTGAGCTGCTTTTTTTTCAGAAGTATATTTCAAAAGTCTTAATATAGAAAGGTTTAGTGCTAGAAGATGTTCTAGTAGATTCAAGTCTCCCTTTTGAGAGGACCTACGTACGCAGATGTAAGAACATCACAGTGGGTTTGATTTGATcatgtgtattatatatatgaaattgtGGACCAGTctcattaaaaaattataatcagACAAAGCCAAAGCTGTGCTAAAAGTTCTttctcttttgtgtgtgtgtgtgtgtgtgttgtttttgatggtcaTGCAGAAGCGATTAATAAACGCTTAAgcaaattaaacattaa
>XM_022677328.1
AGCTGGCAAACTGGTCCTTCTCCAATTTTCTCTCCTGTCTGACTGCTGTGGACACACTGTGATGGTGCCTTAGACTTGCTGAAGGAACTGAAGAACATGAAAATGTCACTGGAGACCCTGCAGtCCACGCGGATTGGCATGTCCGTGAATGCAGTGAGGAAGCAGAGCTCAGATGACGAGGTGCAGTCTCTGGCCAAATCGCTCATCAAAGCTTGGAAGAAGCTGCTTGATGGTGCTGAGGGCAAGTCAGAAGAGAAGAACAAGGGAGGACCCTCACTTCAATCATctacatcatcatcaacaacatCGTCTAAAGACAGTCCTGGGTCTAGTGACAGCAAGAAACCAGAAACACCAAAGACTCCCACCACACCTACAACTCCTACAACCCCCAAGTTCACCTCCTTTCCCCCTGTTCCCGTCACCACCGACAGCGTGCGAACCAAGTGCAGAGAGCTGCTGGTTGCGGCCCTGCAGACAGATGatgatTACAAAAATATTGGATCGGATTGTGATACATTGGCCGCAGAGATTGAAGACTATATCTATAAGGAGTTTAAGTCCACTGATATGAAGTATAAGACGAGACTGAGGAGCCGCATCTCCAACCTTAAAGACCAGAAGAACCCTGACCTGCGCCGCAATGTTCTATGTGGCAACATATCTACCGAACGGATTGCCACCATGACggcagagGAGATGGCAAGTGCGGAGCTGAAAGAGATGAGAAAGGCTCTGACTAAGGAATCCATTCGGGAACATCAGCTCTCCAAAGTGGGCGGCACCGAGACCGATATGTTCATTTGTGGAAAGTGCAAGGGCAAGAAGTGCACCTATACCCAGGTTCAGACACGTAGCGCAGATGAACCGATGACCACCTTTGTGCTGTGCAACGACTGTGGCAACCGGTGGAAGTTTTGCTGAGGAGTGCCGGAATTCTTTGTGCTTTGTGTAAAGAAGTGACAAAAATAATGAAGTgaggtacttttttttttttttttttttttttttttttgggaaaaatgtcaTTTCTTTTTATACCCATTTCACAgctttgtaatatatatttggtGTGCATATTGCTAATTATGCAAATCTTAGGCACTTgatgtaaataattttattttgtattattattattttttttcttttcttttctactGGAACTGTATCCATTGCCTTTAAGCGTTCTGACTCCAGGTTAGCATTAGCTCGTTCAGTACTGCTCTTGCCTAAGATGAAGCACTCTGTGCCTTTTTCTGCGCTTTTTGGTGCCACGATTGTCTTTGCTTAAAGATTTGTACTCATTTCTGCTGCACATTTAGTGGGTTGCAACTGTGCTAGAGTGTTGTAGATATGCATAAAGCTGATTATGcatttgttttgatttatttgtggGGACACTTTCTTTGGACTGCTCATAGCAGACGATTTGCCAATTGTCAATAAACCTTCAAAAAGGGCAGGTAATATTTCTAAAGAATAATCCAGCACTTAagctttattaatttttttcttttttttcttttggctcTAACTATAATCTACAATTTGCCAACAGTTTGATAGTTGGAGTAGATAGTAGATCATTTTGAAGGTCTGTAGATAATCTGTAGATCACTTATAGGAGATCGTTCAATATAAAGTGgggcctctttttttttttgaattatGTGTGAGCTGCTTTTTTTTCAGAAGTATATTTCAAAAGTCTTAATATAGAAAGGTTTAGTGCTAGAAGATGTTCTAGTAGATTCAAGTCTCCCTTTTGAGAGGACCTACGTACGCAGATGTAAGAACATCACAGTGGGTTTGATTTGATcatgtgtattatatatatgaaattgtGGACCAGTctcattaaaaaattataatcagACAAAGCCAAAGCTGTGCTAAAAGTTCTttctcttttgtgtgtgtgtgtgtgtgtgttgtttttgatggtcaTGCAGAAGCGATTAATAAACGCTTAAgcaaattaaacattaa

Function

symbol description
tcea2 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in lens; olfactory placode; and peripheral olfactory organ. Orthologous to human TCEA2 (transcription elongation factor A2).

NR:

description
PREDICTED: transcription elongation factor A protein 2-like

GO: NA

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
TU180473 False 1020 lncRNA 0.35 3 20781448 20783750
XM_007250763.3 True 2174 mRNA 0.41 10 20766916 20783861
XM_022677328.1 False 1992 mRNA 0.41 10 20768963 20783861

Neighbor

gene id symbol gene type direction distance location
sla2 sla2 coding upstream 339837 20409205 ~ 20427079 (+)
LOC103029094 LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192 coding upstream 485547 20253247 ~ 20281369 (+)
LOC103028561 LOC108429303 coding upstream 521225 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 634040 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 1339086 19401855 ~ 19427830 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 388096 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 995703 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 1086596 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 1140474 21924335 ~ 21992497 (+)
LOC103042077 NA coding downstream 1599581 22383442 ~ 22390535 (+)
G133300 NA non-coding upstream 103821 20654377 ~ 20663095 (+)
LOC111194108 NA non-coding upstream 103831 20660063 ~ 20663085 (+)
LOC111194107 NA non-coding upstream 107905 20654436 ~ 20659011 (+)
G133293 NA non-coding upstream 138825 20627820 ~ 20628091 (+)
G133269 NA non-coding upstream 214445 20452163 ~ 20552471 (+)
G133443 NA non-coding downstream 8222 20792083 ~ 20792386 (+)
G133474 NA non-coding downstream 102305 20886166 ~ 20886547 (+)
G133497 NA non-coding downstream 186869 20970730 ~ 20970951 (+)
G133506 NA non-coding downstream 273846 21057707 ~ 21057916 (+)
G133508 NA non-coding downstream 276598 21060459 ~ 21104343 (+)
LOC103029397 ndrg3,LOC103029397,LOC107724194,LOC107705728,LOC107696989,LOC107693556,LOC108429301 other upstream 271085 20293163 ~ 20495831 (+)
G133246 NA other upstream 642368 20123390 ~ 20124548 (+)
LOC103042214 LOC103042214 other upstream 1406025 19347468 ~ 19360891 (+)
G133076 NA other upstream 1722730 19043494 ~ 19044186 (+)
plpbp prosc,LOC107671833,LOC107715029,LOC107707038,LOC107598604,LOC107697965,LOC107593998 other upstream 3242563 17479938 ~ 17524353 (+)
G133501 NA other downstream 224882 21008743 ~ 21015058 (+)
G133502 NA other downstream 226046 21009907 ~ 21015916 (+)
G133503 NA other downstream 227869 21011730 ~ 21017977 (+)
G133509 NA other downstream 285455 21069316 ~ 21074051 (+)
LOC111194020 NA other downstream 1621637 22405498 ~ 22407251 (+)

Expression


Co-expression Network