G133523


Basic Information

Item Value
gene id G133523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 21137675 ~ 21138588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180576
CCCAAAACAAGGGTGTCTGCTGTGGCCACAGCCTGGAGCCCTGTGGCTCTCCTGGGGTGTTTTGAATGGCTGAATCTTCTGGTTCTTTCTGTATCATACTGGCTGGTATTAGGAAAGTCATTAAGGTCTTGCAGTGGCTCAAATCTATTTTGCAAACTAAGTGACTGGAACTGATTTCCTCTGGCTCTGTGCTCTGATCTCCGAGcaatagctttagcattagcattagccagatGTGCTATGTTAGCAGGAGTGGAGGAtactacagagctgtatgtggcaTGGCGTTTGGGTTTAGCTCCAATGCGAACCCATTGCTGGTTTTGCCCATATCTTTCAGCTGTACTCACATTAGGAATGTCCACATGATCTGCTGGTCCAGTTCTGTTCGTCTCCACTGCTCgctgctttgtttttttcccgTTAAAATCCCTGCCCGTTGTCCGCTGGCAGCACTCCCACACTCCGTTGGTCCTCGAACAGCGCAGAGATGCCAGTCCTTAAACTCTGATAACAAGGACCGAAAATTTGTTTCCAAAACAGTCATTCTTTGTAGAAGATTGTAGCAGTTCTGGCAGCACAGGTGCTCTGAACCCACACAAGGAGGCATCTTGCAGATTTCTTCTTAAGTACTCTACAGGAACTTTTCTGATTCCTGTGCCTATGGCTCTACTATAAAATGTccaaaagaaactagaaaaaaataaaataagaaacaaaatatgGTAGTGCTAGTGCTAATCTAAATAATGAGCTCAGACACTGTAGCTcgaaaatatctgaaaataaagaaaagtatgaAAGATAGCAGAGATAGCAGAGCTAAGCAGAGAAGCGTCTGAACGGCACAGAAGCAGGAAGCCCTTAGACCTTTCGGGTGCCcaacggctgcccaaatcacggcataattcaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180576 True 914 lncRNA 0.45 1 21137675 21138588

Neighbor

gene id symbol gene type direction distance location
sla2 sla2 coding upstream 710596 20409205 ~ 20427079 (+)
LOC103029094 LOC108429302,LOC107696986,LOC107705726,LOC107594424,LOC107724192 coding upstream 856306 20253247 ~ 20281369 (+)
LOC103028561 LOC108429303 coding upstream 891984 20135533 ~ 20245691 (+)
LOC103040552 sulf2,sulf2b,LOC108429304,LOC107693554,LOC107724188,LOC107705722 coding upstream 1004799 19908724 ~ 20132876 (+)
sycp2 NA coding upstream 1709845 19401855 ~ 19427830 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560 coding downstream 33369 21171957 ~ 21247961 (+)
myt1 LOC108440949 coding downstream 640976 21779564 ~ 21859171 (+)
LOC103034797 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC107707759,LOC107558232,LOC100536777 coding downstream 731869 21870457 ~ 21880919 (+)
plagl2 plagl2,LOC107558237,LOC107681868,LOC107707758,LOC107747490,LOC107559482 coding downstream 785747 21924335 ~ 21992497 (+)
LOC103042077 NA coding downstream 1244854 22383442 ~ 22390535 (+)
G133520 NA non-coding upstream 3621 21133731 ~ 21134054 (+)
G133508 NA non-coding upstream 33332 21060459 ~ 21104343 (+)
LOC111194019 NA non-coding upstream 40802 21095197 ~ 21096873 (+)
G133506 NA non-coding upstream 79759 21057707 ~ 21057916 (+)
G133497 NA non-coding upstream 166724 20970730 ~ 20970951 (+)
G133527 NA non-coding downstream 18139 21156727 ~ 21156927 (+)
G133532 NA non-coding downstream 56142 21194730 ~ 21260384 (+)
G133557 NA non-coding downstream 155157 21293745 ~ 21299375 (+)
G133564 NA non-coding downstream 171850 21310438 ~ 21310948 (+)
G133568 NA non-coding downstream 225143 21363731 ~ 21437408 (+)
G133509 NA other upstream 63624 21069316 ~ 21074051 (+)
G133503 NA other upstream 119698 21011730 ~ 21017977 (+)
G133502 NA other upstream 121759 21009907 ~ 21015916 (+)
G133501 NA other upstream 122617 21008743 ~ 21015058 (+)
tcea2 tcea2 other upstream 353814 20766916 ~ 20783861 (+)
LOC111194020 NA other downstream 1266910 22405498 ~ 22407251 (+)
LOC103037602 LOC108435244 other downstream 2516560 23655148 ~ 23669956 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 3184907 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 3319288 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 3351317 24489905 ~ 24503010 (+)

Expression


Co-expression Network