G133947


Basic Information

Item Value
gene id G133947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23061277 ~ 23062551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181168
cagtgttgggaagtaacggattacatgtaacggcgttacgtaatcagattacaaattataagtaactgtaatccgttacagttactgcttcaataaatggtaatcagattacagttactctgctaaaattaaaggattacattgcggtactttgctatttttgctcttccaacactgacaaaacgcaaataacattttgcggtgaaatcgctctgatatgaaaGGGAacagcggctccgcacacacaacgagacgaaattaactgacattttggtcaacgaataaaaacaagacgaaaatgtttggcagggacgaaatccaatcagaactgatttagttctgtgaaaggtagggaccagttaggaagagatccaatcactgctactttagcgaaggtggagaggcgggataagcggggtactcatccaatcagtacccgcctctcctgcagtagcaccgcgcgctcagttacaaacccgggaattaaactgtcgttacggagctcgactggaagttaactcgacagtgttcagcagggagagagagaggggagaggcgatatatttctcctttgacgtcgcgaaaaacaagataacgtgtaaaccgcgtggagcgactccatctccggtaaaaacaccactaatctttcagcttctgcagaccagagtcacacagatctccatgcagagatccgcgttttaatgctgatgttatttcatgagctgatgtgtttaactcggcagtgcactaaaacacagaactgatacagaaccctaactcattaagatcagatcatctgtttagtctcacagtgggaaagatatagctagtgttaaagcaggaacaggtcagaaaggaactcaataatatatccaaaataaaacaataaaataagtcaatctatgaacccaaaagtctgtgtaaagttccttacagcactttctcataagtttctcactttaactcatgaagtctctcagtacatcctgagagcatctctacaggacagtgtgtgaaggtgtgtttttgatctcatttatagactgtaggtccagtaggtgtgctgggttactgctggagataaaactagatcatttaaaagctgtttttgcatctacagctctgtttaaactataatttaactattcagttgttttatgacctgatttctagagcaaaattttaaatgtaaaatatatatagtcacacaccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181168 True 1214 lncRNA 0.40 2 23061277 23062551

Neighbor

gene id symbol gene type direction distance location
commd7 commd7,LOC107671961,LOC107719919,LOC107747977,LOC107603136 coding upstream 49603 23004604 ~ 23011674 (+)
LOC103034140 NA coding upstream 151741 22902892 ~ 22909536 (+)
snph NA coding upstream 257515 22772215 ~ 22803762 (+)
ntsr1 ntsr1 coding upstream 397883 22582702 ~ 22663394 (+)
LOC111194119 NA coding upstream 515066 22545485 ~ 22546211 (+)
LOC103032452 srms,LOC108435233,LOC108276248,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding downstream 154969 23217520 ~ 23238989 (+)
LOC111194120 NA coding downstream 178533 23241084 ~ 23241689 (+)
LOC103032752 LOC108435232 coding downstream 178974 23241525 ~ 23252731 (+)
LOC103027302 rnd1a,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding downstream 523467 23586018 ~ 23602811 (+)
prim1 prim1,LOC107741309 coding downstream 561679 23624230 ~ 23631324 (+)
G133933 NA non-coding upstream 47595 22949920 ~ 23013682 (+)
G133930 LOC108435229,LOC107747976,LOC108228951,LOC107707738,LOC107672053,LOC107657059,LOC107563667 non-coding upstream 112668 22943090 ~ 22948609 (+)
G133926 dnmt3b non-coding upstream 129949 22918360 ~ 22931328 (+)
G133907 NA non-coding upstream 197218 22849560 ~ 22864059 (+)
G133906 NA non-coding upstream 199331 22861402 ~ 22861946 (+)
G133961 NA non-coding downstream 211761 23274312 ~ 23274723 (+)
G134050 NA non-coding downstream 543195 23605746 ~ 23605987 (+)
G134052 tfip11,LOC107741308,LOC107737658,LOC107671994 non-coding downstream 569919 23632470 ~ 23634591 (+)
G134070 NA non-coding downstream 676384 23738935 ~ 23758995 (+)
G134083 NA non-coding downstream 741699 23804250 ~ 23806541 (+)
LOC111194020 NA other upstream 654026 22405498 ~ 22407251 (+)
G133509 NA other upstream 1987226 21069316 ~ 21074051 (+)
G133503 NA other upstream 2043300 21011730 ~ 21017977 (+)
G133502 NA other upstream 2045361 21009907 ~ 21015916 (+)
G133501 NA other upstream 2046219 21008743 ~ 21015058 (+)
LOC103037602 LOC108435244 other downstream 592597 23655148 ~ 23669956 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 1260944 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 1395325 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 1427354 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 1543098 24605649 ~ 24661534 (+)

Expression


Co-expression Network