G134052 (tfip11,LOC107741308,LOC107737658,LOC107671994)


Basic Information

Item Value
gene id G134052
gene name tfip11,LOC107741308,LOC107737658,LOC107671994
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23632470 ~ 23634591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181311
ATTTATTTCaaagtttttcacatttttacaaaatgtataaaacatgccTTACGGTCACAAAAACCTATTTAACAAACTGAATCTGCATCACACTCAACAACATCTGTCAGGCTGAgatgttttccttttatttgGCCATGTCGATAAGACTCTGTAGTGATGTAGGAACCCATGTCTTTTTGCCTTGAACAAACACCACTCCCCGCTCAATGTAGATCATGATCCTGCCGAAAGTGTACAGCTGCTTGCCCATGTGCCGCTTTCCCACCAAGGGCATGAAGACGATGCCATTCTCTTCAGCCTTGGCCTGGATAAGGTCTTTGAAGTGGGTGGGTATTGATGGAGGAACAGAGACAGTGCCTGGAGGGCGTGGGACACTACTCTCCACCTCACGccgctcctgctgctgctgctgctgctgagctgAAGCCTCGTACTGGAAATCCTTCCTCCTCTCCGTCTGGGTCAGATACGCAATGTTCTCCCTCGCACCAGGTTGCATGTAGCCTCCTAGTCCAGAAGCCACAGCTCTGTTCATGATATCAAGAGCCTCGTTGAGCTTCTCCTTGATGACTGGGTGACTGAGCAGAGTCTCTGAGAGCATGCTCTTCCAGCCCAAATACCACTTGGTGATCTCTTCATAGTTAGGGTTGTTGCTCAGCCAAGAACACAACACCTGTAgccatttgttaaaaaaatgcttgTCAAGAAGTCCCACCattgaggagagagagagcatgcctTCCCAGTCCATCACCCAAGTGAATGGTTCAACCAACTGCTGATGTGGGTTCACCACCAACTCTCCTAGACACAAAGCTGCACCACAAACCAACACATTAGAAAACAACAGTTAAGTATTTAGCTTTGTATCAATATTACTTTGAAGTTTTTGAAAACATCC
>TU181312
ATTTATTTCaaagtttttcacatttttacaaaatgtataaaacatgccTTACGGTCACAAAAACCTATTTAACAAACTGAATCTGCATCACACTCAACAACATCTGTCAGGCTGAgatgttttccttttatttgGCCATGTCGATAAGACTCTGTAGTGATGTAGGAACCCATGTCTTTTTGCCTTGAACAAACACCACTCCCCGCTCAATGTAGATCATGATCCTGCCGAAAGTGTACAGCTGCTTGCCCATGTGCCGCTTTCCCACCAAGGGCATGAAGACGATGCCATTCTCTTCAGCCTTGGCCTGGATAAGGTCTTTGAAGTGGGTGGGTATTGATGGAGGAACAGAGACAGTGCCTGGAGGGCGTGGGACACTACTCTCCACCTCACGccgctcctgctgctgctgctgctgctgagctgAAGCCTCGTACTGGAAATCCTTCCTCCTCTCCGTCTGGGTCAGATACGCAATGTTCTCCCTCGCACCAGGTTGCATGTAGCCTCCTAGTCCAGAAGCCACAGCTCTGTTCATGATATCAAGAGCCTCGTTGAGCTTCTCCTTGATGACTGGGTGACTGAGCAGAGTCTCTGAGAGCATGCTCTTCCAGCCCAAATACCACTTGGTGATCTCTTCATAGTTAGGGTTGTTGCTCAGCCAAGAACACAACACCTGGAACATCACAAGACCAAAGAAAAACATAGATGTATTATCTGCAAAGTACATAAACACAGTG

Function

symbol description
tfip11 Predicted to enable nucleic acid binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type post-mRNA release spliceosomal complex. Orthologous to human TFIP11 (tuftelin interacting protein 11).

NR:

description
PREDICTED: tuftelin-interacting protein 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181311 True 904 lncRNA 0.46 3 23632470 23634591
TU181312 False 740 lncRNA 0.47 2 23632470 23634167

Neighbor

gene id symbol gene type direction distance location
prim1 prim1,LOC107741309 coding upstream 1146 23624230 ~ 23631324 (+)
LOC103027302 rnd1a,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 29659 23586018 ~ 23602811 (+)
LOC103032752 LOC108435232 coding upstream 379739 23241525 ~ 23252731 (+)
LOC111194120 NA coding upstream 390781 23241084 ~ 23241689 (+)
LOC103032452 srms,LOC108435233,LOC108276248,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding upstream 393481 23217520 ~ 23238989 (+)
naca naca,LOC106571941,LOC100286403 coding downstream 7355 23641946 ~ 23653903 (+)
LOC103026317 LOC108435243,LOC108276480,LOC107672057,LOC107737654 coding downstream 36965 23671556 ~ 23705991 (+)
LOC103023698 LOC108435245,LOC108425699,LOC105906847,LOC108435246,LOC103365807,LOC105923626 coding downstream 82473 23717064 ~ 23723011 (+)
uba3 uba3,LOC108435248 coding downstream 178604 23813195 ~ 23832512 (+)
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding downstream 199763 23834354 ~ 23857902 (+)
G134050 NA non-coding upstream 26483 23605746 ~ 23605987 (+)
G133961 NA non-coding upstream 357747 23274312 ~ 23274723 (+)
G133947 NA non-coding upstream 569919 23061277 ~ 23062551 (+)
G133933 NA non-coding upstream 618788 22949920 ~ 23013682 (+)
G133930 LOC108435229,LOC107747976,LOC108228951,LOC107707738,LOC107672053,LOC107657059,LOC107563667 non-coding upstream 683861 22943090 ~ 22948609 (+)
G134070 NA non-coding downstream 104344 23738935 ~ 23758995 (+)
G134083 NA non-coding downstream 169659 23804250 ~ 23806541 (+)
G134085 LOC108435216,LOC108275538,LOC105013740,LOC104924681 non-coding downstream 181325 23815916 ~ 23817235 (+)
G134204 NA non-coding downstream 486816 24121407 ~ 24122160 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding downstream 506479 24141070 ~ 24147795 (+)
LOC111194020 NA other upstream 1225219 22405498 ~ 22407251 (+)
G133509 NA other upstream 2558419 21069316 ~ 21074051 (+)
G133503 NA other upstream 2614493 21011730 ~ 21017977 (+)
G133502 NA other upstream 2616554 21009907 ~ 21015916 (+)
G133501 NA other upstream 2617412 21008743 ~ 21015058 (+)
LOC103037602 LOC108435244 other downstream 20557 23655148 ~ 23669956 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 688904 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 823285 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 855314 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 971058 24605649 ~ 24661534 (+)

Expression


Co-expression Network