LOC103037602 (LOC108435244)


Basic Information

Item Value
gene id LOC103037602
gene name LOC108435244
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23655148 ~ 23669956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181318
ACAATCTCATCTTTGCATTTAAGGTCACTGCAGGACGATCATAAATTTGAGTCGGCTGTATGTTGTTCAGTAATACGTATTAGCTGAAATGTTGTAAGTGTTCTTTCTGGAATGGTCTAAAACAGGCGGGTAAACAGGTTTCTGTAAGTTtgagaagtagttagttagtaacGTTTCTCTGTTTAAAACCTGAGCAGCGGAAACAGTGGCGAGAAGTCTTTATTTTCTTCAGTAATAAATTGTTAAACTCGCGGTTTAAAACCCCGATATGGCCTCTGTGAGAGTCCTGACAGCCCTGCGGTGTAACCCCGGTCTCAGGTCCGCGGCGGCTGCTGGTCCTCTGCGGCTGATCTGCAGCTCCGCTCCACAGCCTGTCCGGGTGCTGTACGATGGAGAGTGTCCTATATGTGTTAAGGAAATCGAGGTTCTTCGGTTTGTGCAGAAGAACAGGACTGGTTCACCGTGGCGTTCCTGCATTTGCTGTTATGTACAAAGCTGTGGGTCTGGGCTGGTTGGCCAGGTTAATCTCTCTGCCTCTCATCAGGCCTCTGATGGACCGTGCATATGATGTGTTTGCCAGGAACAGACTGAGGTGGACTGGACGAGAAGAATGCACAACAGGACAGTGTGATAAGAGAGACAAAAGAGAACCCcgataaattattttaatacatgtctaaataaatacactgcccggccaaaaaaagtcgccacgtggatttaactaagtaaatgatctgggtttgatgctgcagttggtcaggtctaggttcagcaacagtatgtgctgaaagaatgaagtcagctgactacctgaatatattgaatatagaccgggttattccatcaatgcattttttatttcctgatggcacgagcatattccaagatgacaatgccaggattcatgggactggaattgtgaaagagtggttcagggagcatgagatcatcattttcatgtgcagtggtcagattctaccatcatcaatgctgcaagatcttggtgaaaaatgaatcttgtgacattgcagaagcttgttGAAACAGAGCCACAGCGAATGCATGCTGCAGTCAAAGCTAAACATCACATTAGAGTGTGTAAATTGTTTTTGGTGGCGACTTTTTGGCT
>XM_022677362.1
aggttttcaaattggtaaaatcataaATGTAAGATGTCTCTTCATTCTTACATTTTAGTTGGTCTCTTATTTAATTAGTTGGTCTCTGTATGTTAAAATTGAAATGGAGacttttatagttatatgtggGACTTTTATATTGAAATTTGGTGACGGCTGCTCTTACCGGCTGCCTCAGTGAAATGTTACCAAACCAGCACTCATGTTATCAAACAATCTCATCTTTGCATTTAAGGTCACTGCAGGACGATCATAAATTTGAGTCGGCTGTATGTTGTTCAGTAATACGTATTAGCTGAAATGTTGTAAGTGTTCTTTCTGGAATGGTCTAAAACAGGCGGGTAAACAGGTTTCTGTAAGTTtgagaagtagttagttagtaacGTTTCTCTGTTTAAAACCTGAGCAGCGGAAACAGTGGCGAGAAGTCTTTATTTTCTTCAGTAATAAATTGTTAAACTCGCGGTTTAAAACCCCGATATGGCCTCTGTGAGAGTCCTGACAGCCCTGCGGTGTAACCCCGGTCTCAGGTCCGCGGCGGCTGCTGGTCCTCTGCGGCTGATCTGCAGCTCCGCTCCACAGCCTGTCCGGGTGCTGTACGATGGAGAGTGTCCTATATGTGTTAAGGAAATCGAGGTTCTTCGGTTTGTGCAGAAGAACAGGACTGGTAAAGTGGAGTTTGTTGATATTTCTGTACCAGAGTACGATGGTGGGAGGTACAGAGGGGTCAGTTATGAAGTGGCCATGAAGGAGATGACTGTGATTGACGAGAACGATGAGGTTCACCGTGGCGTTCCTGCATTTGCTGTTATGTACAAAGCTGTGGGTCTGGGCTGGTTGGCCAGGTTAATCTCTCTGCCTCTCATCAGGCCTCTGATGGACCGTGCATATGATGTGTTTGCCAGGAACAGACTGAGGTGGACTGGACGAGAAGAATGCACAACAGGACAGTGTGATAAGAGAGACAAAAGAGAACCCcgataaattattttaatacatgtctaaataaatacactgcccggccaaaaaaagtcgccacgtggatttaactaagtaaatgatctgggtttgatgctgcagttggtcaggtctaggttcagcaacagtatgtgctgaaagaatgaagtcagctgactacctgaatatattgaatatagaccgggttattccatcaatgcattttttatttcctgatggcacgagcatattccaagatgacaatgccaggattcatgggactggaattgtgaaagagtggttcagggagcatgagatcatcattttcatgtgcagtggtcagattctaccatcatcaatgctgcaagatcttggtgaaaaatgaatcttgtgacattgcagaagcttgttGAAACAGAGCCACAGCGAATGCATGCTGCAGTCAAAGCTAAACATCACATTAGAGTGTGTAAATTGTTTTTGGTGGCGACTTTTTGGCTAGGCAGTGTATATAAATGAAAAatcatgtataaatatataactacaTATTTTTTGTCCATTGCATTGCCTGTGtttactcattttattttatgttagatattgatctttttattttacaaaccatctttaaacaggtaaaaaaaaaagacaaaaaatacataaaatgagCTCTTTCTTTGCCTTGCTGGTTCTAGTGCTGCCATGTCCTAATGAAAGtcgctttttaaaaaaatgtactacaaataatttaataaaattaataaaatacatcatgtccattgtaatgaaggcaggatctgaaagggttaaacactCGGGAAGCCGATAAAAAATAAGATTGCAAATTTGTCCAGTATAGGCTCAATATACATCAATATAAATGACACACATCTGAAtgcataattttaaaaaggatacaaataaataaaacaatttaatacaCCTTAATCTGATATCTTGATTgtctttattgaaaaaaaaaatcagtattgcatttacataatatatacaaCAGTTTCTGAAACTTGATCTCAGGCAGCACCCTGTGTTAACACCCCCGGCCTCGTCCAACTGTAAAACATGTCTGCGTTTCCTAGAAGGGGTTGATATCTCGTGGACAAGCTTTTAGGACACTGAAGGTACATTTCACTAAATATAGAACATTTATAGTCAAGCAGGCGCACGAGCACATGTTTATTTTGTACAGGAGAGCGCGGGGATTGGTGCGTTAGAGTGTCACTTGATTCTCCTCAGCCAAAACAACCAATAGGATTGAAGCCAACAACCCCCATGAGGTCACAACAATACTGGGTGTAAATAAAACAGGAATAAATGGTAGCGTATCAATAAGAAACACTCTGTTTATAAGCTTAGAAGGGAAAGTGAGCACATTCAGAAATCTCATCAGGAGGACATTAAAGACgcagGTTTGTCCAGTGTGGAGCACTTCCTTGGACACTGGAATTTCTCTTGGATCTTCTCTTGTCTGGACATCTGACTGGCTTGTAAATCACTGCTGGCACACACCTCTGTACACCTTTGACTCCAAAGGTTCTGGTTTATATTCAAGACTGTAAATCAGCTTGCTAGCATCTGAACTTCTTTTTGTTATTGTCTCACATTAAAAGAGTCCTTTTCCATGAGGCCTCACGGATCATATTTGAGTTGCCATGTTTCTTCCTGTAGTCTTCTTCCTATAGGAAGAATTTCTCTTAAAAGGTCAAGACAGAGGCCTCTGATCTTCATTAATACTGGTCCAAAACATGGCCCTTATATGTGCTTTGCTCAGGTTCAGGCTTCTCAGAGCTATTCCACCTCCAGCAGGGACACATTTAAAGCAGAAGCTCCCATCGGAGTTTACCAGAACAGCGAGGCTGCTTTTCAAATGCGGCTATTGGAGACGAGACTTGGGGATTCCTTCAAACATCTGTCTAGACGTGTTAATGTATACTTTAAGCAGAAGGAGAAGACTGGGTCTGGTGGTTCTGGTCAGGCTAGCTTTGTATCTGCAGTACTGGAGCCTGCCACTAGAGTGCAGAGGCAAGAAATTAAAGATAGATCTTATATGGTGAAAGATACTACTGAGGGAGCCTTCACAATCAAGCCTGAGGAAGCATCACTGTTCTCCAAATATTCTGGTTTACATCTGTTCCATATCAGCTCACTGGCAACCAGGTTTGGCGAGTCCTACAACTACGTAGCCAATCATATAAACTCTGTATTTTCCAAGAATCCAATAAAACAAACCTATGTGAAACTGCAAACACCTGCAGATATGGTTCGAAGAtgcagaatgagagagagaagagttacaaaccaacaaaatataatttcagAAACTGGCTCAGACACTTATAATTCAAGCCCAGCAGCAAGAGATGGACACAATACAGATCTTTCCTGTTCTTGGGAAGAGGGATATCTCCACTTCGCTCGTCGTATCAACCAATACTTTGGGGCGAAAACAGCAGAAACCttagaaaaatacaagaatAATCAAAGCACATATTCTTCAAAACATAAGCAGCCTACCCTAGAAAGCCCAGAGAACCCAATGCCCCTCAGACCTAAATCCCTATTCCACATAAGCAACCTCACTACGCACTTCGGAGAAAGCTACGCCTATATGGGCACCCACATCAACCATTACTTCAAAGGCTCTGCAGCCGCAGAagaggaaatagagagagatccTTACAGAGGACAGTCTGAATACACAGTCACTCCAGCGAGAGAAGCTGggttctttttccagagctttttcaACCCCTCAGCCATCCCCAGCATTGTGGGCAGCTACCTAGGAAAGGTCTCTAGTGGTTCTACTGCTCCAGAGGCCAGGCTGGATAGAGTGGCATTGGGCAGGAGGTTGGCAGAAGAGAAGACTCAAGTTCTACTCAACAGAttaaagaaagcaaaaacaCGCTCATCCCTCAGCCTCTGTGTCGAGGAACTCAATGCTCACCTCATTCAGCACCCAGCATGCAAAGATGCTGTATGGCAGGAAAGAATAGTACTGCAGATACTGAAGCATCGACAGCTTTTCTGGATGGATAAGAAACTCCAAGGAGCCATTAGAGAAACTCTGGCGCTGATTGGTTATGTGGATCCGCTCAAAGGTCGGGGAATACGAGTGCTGTCCATCGACGGAGGTGGAACCAGAGGTGTGGTTCCACTGCAAGTGCTGAAGCAGCTGGAGGCTCAGACAGGAAAGCGCATCTATGAGCTCTTCGATTACATCTGTGGGGTCAGCACAGGAGCAGTTTTGGCGTTTACTCTGGCTTTGGCTCGATTCTCCTTAGAAGAGTGTGAAGAAATGTACAGGCGTTTTGGGTCAGATGTTTTCAGACAGAACCCACTAGTTGGCACGATGAAAATGGGCTGGACTCACTCGtactacaacacagagacctgGGAGACAATCCTAAAGGAGAAGATGGGTGACCATCTCCTTATTAAAACAGCCAGAGATGAGCTCAGCCCTAAGGTGTCTGCAATCAGTGCAGTGGTGAACTGGGGGACCAGTCCCAAACCCTTCATCTTCAGGAACTATAATCACTGTCCGAGCCGCCTTAGCCGTTACGCGGGGGGGTCCAGTTACCAGCTTTGGCAGGCAGTACGAGCTTCTTCCGCTGCTCCGGGATACTTTCAGGAGTTCCCTCTGCACAATGACATACATCAGGATGGAGGCCTCATTCTGAATAACCCCTGCGCCCTCGCTGTTCACGAGAGCCGCCTGCTTTGGCCAAACCAGCCCTTCCAGTGTGTGCTGTCTCTGGGAACAGGTCGATATGATAATGCCAGAAGGGGTCCTGCCACGTCCACAAGCTTGAGGGCCAAAATCAGCAACCTGATTAGCAGTGCCACCGACACAGAGGGTGTTCACACTCTTCTAGCTGACCTTCTGGAGCCAAACGTGTATTTTCGCTTTAACCCGATGCTGAGTGCCGGGGTTTCTCTGGATGAGAGCAGACCTAGTgctctgcagcagcttcaggagGACACGCAGCACTACCTGGAGCATAACCACCTCAGACTGGAGCAGCTGTGCAAAGTGCTGGGCGAGGAACgcacagctctggggaaaaccTGGGACTGGATCAGTGTGAAAGGCTGGGAACTGCAGCAACGTTTGGGATAACTGATTTTATCAAAGTTCTTTAAATTCtggggaataaaaaaaaatacagcagtcATTTAACAACGGCCATGTATGGCTGCTAATCAAATCCGAATGTAAAAAGTGACAAAAAGATAATAT

Function

NR:

description
PREDICTED: calcium-independent phospholipase A2-gamma-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181318 False 1132 TUCP 0.45 3 23655360 23657642
XM_022677362.1 True 5218 mRNA 0.44 12 23655148 23669956

Neighbor

gene id symbol gene type direction distance location
naca naca,LOC106571941,LOC100286403 coding upstream 1245 23641946 ~ 23653903 (+)
prim1 prim1,LOC107741309 coding upstream 23824 23624230 ~ 23631324 (+)
LOC103027302 rnd1a,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 52337 23586018 ~ 23602811 (+)
LOC103032752 LOC108435232 coding upstream 402417 23241525 ~ 23252731 (+)
LOC111194120 NA coding upstream 413459 23241084 ~ 23241689 (+)
LOC103026317 LOC108435243,LOC108276480,LOC107672057,LOC107737654 coding downstream 1600 23671556 ~ 23705991 (+)
LOC103023698 LOC108435245,LOC108425699,LOC105906847,LOC108435246,LOC103365807,LOC105923626 coding downstream 47108 23717064 ~ 23723011 (+)
uba3 uba3,LOC108435248 coding downstream 143239 23813195 ~ 23832512 (+)
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding downstream 164398 23834354 ~ 23857902 (+)
LOC111194121 NA coding downstream 280945 23950901 ~ 23953570 (+)
G134052 tfip11,LOC107741308,LOC107737658,LOC107671994 non-coding upstream 20557 23632470 ~ 23634591 (+)
G134050 NA non-coding upstream 49161 23605746 ~ 23605987 (+)
G133961 NA non-coding upstream 380425 23274312 ~ 23274723 (+)
G133947 NA non-coding upstream 592597 23061277 ~ 23062551 (+)
G133933 NA non-coding upstream 641466 22949920 ~ 23013682 (+)
G134070 NA non-coding downstream 68979 23738935 ~ 23758995 (+)
G134083 NA non-coding downstream 134294 23804250 ~ 23806541 (+)
G134085 LOC108435216,LOC108275538,LOC105013740,LOC104924681 non-coding downstream 145960 23815916 ~ 23817235 (+)
G134204 NA non-coding downstream 451451 24121407 ~ 24122160 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding downstream 471114 24141070 ~ 24147795 (+)
LOC111194020 NA other upstream 1247897 22405498 ~ 22407251 (+)
G133509 NA other upstream 2581097 21069316 ~ 21074051 (+)
G133503 NA other upstream 2637171 21011730 ~ 21017977 (+)
G133502 NA other upstream 2639232 21009907 ~ 21015916 (+)
G133501 NA other upstream 2640090 21008743 ~ 21015058 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 653539 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 787920 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 819949 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 935693 24605649 ~ 24661534 (+)
G134426 NA other downstream 951952 24621908 ~ 24632130 (+)

Expression


Co-expression Network