G134236 (sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474)


Basic Information

Item Value
gene id G134236
gene name sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24323495 ~ 24336745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181573
tttatttttattcaatgaATTTCATTGAAATGCAGACATTCCAAACAGCGGAATGTCACCACAGAGTATCAGCCtgacagaacatttttataaCTCTTAACACATTGACAATTGGCATTCAGGCTACATCCAACCtgcattattatattacagtCCTCTGGTTTGAGCAAATGACTCGCAGCGCTAGCATAATAAATCCTCACTGAATGAGCTGCAGCGCAGTGGCAATATAAACTTGctaaggagttttttttttttaaatgtcagattgcttatttatctatttagcACTGAATTATCTTTATGCTTGAATTGAGTTTTTGCTGCTGTAGGCCAGGTAGTACAAAACAATGCCAATGACAGCAGCCAGGACCTCAGTAGACACCCACGGACCATTCCATGCACCCCGGTGATCTACATTAACAGTGAAGAGAGGCTTAATGGCTTCAACATCTTCATTATTTCTTTGAGCCTTGCGCAGCATGCTGTAGGACTCCTCATCAAAGAACTTGACTTGGTATGTGCCTGAACCAGCCTGATTGTGGGGAGCGCTCCAGGACACCTGATATTTTCCAACATCCTGGCCTCTGGTCACTGGAAACTGTCTGCCACTGACATCTGCGTAAAGGGCAAGGCTCTGGGCTCCATTTCCACAGGCCAGACTCAGCTCAACAATGAAGACCGTCTCAGAGGAGATGACTGCATCATTTGTTGTGTATGAGGAGGTGGAGATGACCGGATCTGTGCAGGTCTCAGCCGCACACAGACTCAGACAGAGAGCCAGAACTGCAGAAACGAGGCGCATCATGTTGATTTCTCAGGCTGAAGTAACCACAGAGAACTGAGCTTTCTGAAAGA
>TU181574
GTGCGGTTGAGTGTGGCCATGTTGAGCATGGCCTCCTGATAAGCTTGTTCCACCTCCTCCTTTGTTATCACCAGTTTGATCTTGTTCCATTTTTCAGGTATGTCCATCCATTGATGAGCATTGACCGCGACCTGGGTTCCAAGAGGTTTGGTGAGAACCAGCACATCTCCTGGTACAGCACTGTCTGGCATGATGAAGTCATTGGGTTGACACACCACAGTCGCCACACCACCTACAatgatccaggggttcatgacAGTCTGGCCACCCGTCACTGAAGTCCCACCCTCTTCAGCAGCATCACGGAAGCCCTTCATCATTAAGGGCATCACCACCTCCCGCTCCTTCATTCATCTTCTGGCTGACGCTAAGCAGCATCAGCATGTTATCACACTCAGTGATGCCCATGGCGTACAGGTCACTCAGCACATTTGCACAGGCTATTCGACCCATCATGTAAGGATCTTCAACTAAAGGGTAGAAGAAATCTGTAGTTTGGATCAGGGACAAACCTCCATGCCTCAAAGGGATGACACAAGAATCCATCCCAATACCTAGCCGGGGTCCATGTGCACCCGAAGCGAGCTGCCCGAACTCAGACACCTCGTCCCCGGCCTCTCCGGTCCTCCCGTCCTCCCCCGCCGGGCGGTCGGGCTCCAGTCCCTGCAGGAGTTTGAGCAGAGTCTCCTGCGGGACTTTACAGCCTCATCCCTTCATGTCGGAGAAGGCCGTGAGGCGAAAGGCGCGCTCCAGGCCGTGCTCCTCCGGGTGAAGAGCCTGGTAACCGGCCGGGTAAAAGGGGAGGTAGGCGCCCGCTCCGCACGACTCAGCCGGCGGGGACGGCGGGTCTGAACGAGACATGCTGCGCTGGAAGCTACTGAATCCTCattcagacagagagagagctgaaCCCGGAGCAGAAGCCCTGTTATTACCCCTAACAAGTGTGAGTTATTGTGTGTTACAGCGCCGTAGCGAGCTGTGGTTTAGTCAGAGCCGGTTTATATCAGGAGAGCCTGTCCACTTCGTGTTCATCCGTTATATTATTAAACAATTTCCCGCCTCTAGGGGGAGCCCGCGAGGGAGTCAGCAATGAACTGGGGGAATAGTGCTAAGCGgctaaaaactcaaattaaaaatagtgtctaaccaattttacagcattttctttaatttcagaaaatataataaaacatattactcaaaatgtaaagaaaaagcaTCCGAGTTTATCCGTTTTTCTACAACAAACGATTTTTAGACAACA

Function

symbol description
ssr4 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in several structures, including axis; endocrine system; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iy. Orthologous to human SSR4 (signal sequence receptor subunit 4).
sps2 Predicted to enable purine nucleotide binding activity and selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to be active in cytoplasm. Is expressed in several structures, including egg chamber; embryonic/larval gut; midgut primordium; and presumptive embryonic/larval system. Orthologous to human SEPHS1 (selenophosphate synthetase 1) and SEPHS2 (selenophosphate synthetase 2).

NR:

description
selenide, water dikinase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181573 False 858 lncRNA 0.45 6 24332794 24336745
TU181574 True 1267 TUCP 0.52 6 24323495 24328327

Neighbor

gene id symbol gene type direction distance location
LOC103045451 avpr2,LOC108436342 coding upstream 28221 24242500 ~ 24295274 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding upstream 136747 24169405 ~ 24186748 (+)
LOC111194121 NA coding upstream 369925 23950901 ~ 23953570 (+)
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding upstream 465593 23834354 ~ 23857902 (+)
uba3 uba3,LOC108435248 coding upstream 490983 23813195 ~ 23832512 (+)
LOC111194043 NA coding downstream 205501 24542246 ~ 24550608 (+)
fkbpl NA coding downstream 461780 24798525 ~ 24801627 (+)
trnan-guu_2 NA coding downstream 468057 24804802 ~ 24804873 (+)
ccdc115 ccdc115 coding downstream 475152 24811897 ~ 24814853 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding downstream 478624 24815369 ~ 24820684 (+)
G134234 NA non-coding upstream 1314 24317875 ~ 24322181 (+)
G134233 NA non-coding upstream 66392 24256871 ~ 24257103 (+)
G134225 NA non-coding upstream 94399 24228557 ~ 24229096 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding upstream 175700 24141070 ~ 24147795 (+)
G134204 NA non-coding upstream 201335 24121407 ~ 24122160 (+)
G134334 arhgap4,LOC108436338 non-coding downstream 24530 24361275 ~ 24364475 (+)
G134359 NA non-coding downstream 98368 24435113 ~ 24437873 (+)
G134349 NA non-coding downstream 147278 24484023 ~ 24484838 (+)
G134369 nsfl1c,LOC107741325,LOC106566439 non-coding downstream 167622 24504367 ~ 24510768 (+)
G134370 NA non-coding downstream 186654 24523399 ~ 24523781 (+)
LOC103037602 LOC108435244 other upstream 653539 23655148 ~ 23669956 (+)
LOC111194020 NA other upstream 1916244 22405498 ~ 22407251 (+)
G133509 NA other upstream 3249444 21069316 ~ 21074051 (+)
G133503 NA other upstream 3305518 21011730 ~ 21017977 (+)
G133502 NA other upstream 3307579 21009907 ~ 21015916 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 121131 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 153160 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 268904 24605649 ~ 24661534 (+)
G134426 NA other downstream 285163 24621908 ~ 24632130 (+)
trnae-uuc_18 NA other downstream 474184 24810929 ~ 24811000 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022262 sephs2 coding NC_007134.7 CM002907.2 18558209 ~ 18568522 (-)