G134462


Basic Information

Item Value
gene id G134462
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24804059 ~ 24804796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181879
tgagatatacctttaatactatataaaattgTGTGGTATAcctttaatactatataaaatattgtggcatctgttatactatataaaatatagtggtacacttgttatactatgtaaaataaatgctggTATACCTGTTATaccatataaaatattgtgatataactttaatactgtataaaatattgtggtatacctttaatagtaaataaaatattctggtATCTACAATATTGTGGTATACATTttatactatgtaaaatattgtggtataccgGTTATAATATATAGAACACTGTGGTATACATGTTATACTATGTAACAATTTGTGATAAGCCTTTTATagtacataaaatgtattttttttcacataatttAGAGATTAACAGTAAATTAAGATTAGTGTATAGAAAAACGTGTTTAAATGCCTCTAAATTTCAGTAGATTCTagttacatttaaaatctaAGCTGCTGTTCTTTGATAGCACACTGGGATTTGAACTCGCGACCTTTGTATCTGCCCCGATCTTCCCTTTAGCTcagaaaatgacaataataatataaaaagaaacatattcaacgaaataaacactgcagttctttaaaagaGGCAGAaccatttcatttttcagtttttgctcGATggttaacttttctttttctcgctttctttccttttccctTCTTCCCCCTTCTTCCctccattttttcttcttcccacGGTAAAGCAGACTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181879 True 738 lncRNA 0.29 1 24804059 24804796

Neighbor

gene id symbol gene type direction distance location
fkbpl NA coding upstream 2432 24798525 ~ 24801627 (+)
LOC111194043 NA coding upstream 253451 24542246 ~ 24550608 (+)
LOC103045451 avpr2,LOC108436342 coding upstream 508785 24242500 ~ 24295274 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding upstream 617311 24169405 ~ 24186748 (+)
LOC111194121 NA coding upstream 850489 23950901 ~ 23953570 (+)
trnan-guu_2 NA coding downstream 6 24804802 ~ 24804873 (+)
ccdc115 ccdc115 coding downstream 7101 24811897 ~ 24814853 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding downstream 10573 24815369 ~ 24820684 (+)
apobec2 apobec2,apobec2b,LOC108276433,LOC107657013 coding downstream 18714 24823510 ~ 24829732 (+)
LOC103032751 LOC108436294 coding downstream 211989 25016785 ~ 25021096 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding upstream 47580 24751925 ~ 24756479 (+)
G134444 arfgef2,LOC108436330,LOC107737629,LOC107562465,LOC107671990 non-coding upstream 84671 24715513 ~ 24719388 (+)
G134430 NA non-coding upstream 148211 24654175 ~ 24655848 (+)
G134371 NA non-coding upstream 278487 24525092 ~ 24525572 (+)
G134370 NA non-coding upstream 280278 24523399 ~ 24523781 (+)
G134475 NA non-coding downstream 34509 24839305 ~ 24839935 (+)
G134476 NA non-coding downstream 35333 24840129 ~ 24840348 (+)
G134477 NA non-coding downstream 36147 24840943 ~ 24841238 (+)
G134615 NA non-coding downstream 387795 25192591 ~ 25192957 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding downstream 388414 25193210 ~ 25195840 (+)
LOC103036968 LOC108436332 other upstream 142525 24605649 ~ 24661534 (+)
G134426 NA other upstream 171929 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 301049 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 323687 24457876 ~ 24480372 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other upstream 467314 24323495 ~ 24336745 (+)
trnae-uuc_18 NA other downstream 6133 24810929 ~ 24811000 (+)
smim4 smim4 other downstream 381020 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 432675 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 495985 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 515345 25320141 ~ 25324699 (+)

Expression


Co-expression Network