G134477


Basic Information

Item Value
gene id G134477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24840943 ~ 24841238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181898
TTTGAGTCATTTCTAGACTCACCTTGAAATCATAAACTTGCTTTGATAGATCATCAATCCTCCTGTTTGAAGAATCAACTATGATCTGTACACAAGCTTTGAAGGTTCTTTCCTGTTGTTCAAGCAAGGTTCTGTAGAAATCCTTCTGCTGATCCAGTAATTCACGCACTTGAGCCATTGTGACGTATTCCTCAGTGTTGTTAGAGGCTTTAGGTGGCATGGTTTGGCACTCAGCCTTCAAGGCCTAGTAGGCCCAAAGTTCCAGCCAAACAAAGGTctaaatttacacaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181898 True 296 lncRNA 0.41 1 24840943 24841238

Neighbor

gene id symbol gene type direction distance location
apobec2 apobec2,apobec2b,LOC108276433,LOC107657013 coding upstream 11211 24823510 ~ 24829732 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding upstream 20259 24815369 ~ 24820684 (+)
ccdc115 ccdc115 coding upstream 26090 24811897 ~ 24814853 (+)
trnan-guu_2 NA coding upstream 36070 24804802 ~ 24804873 (+)
fkbpl NA coding upstream 39316 24798525 ~ 24801627 (+)
LOC103032751 LOC108436294 coding downstream 175547 25016785 ~ 25021096 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding downstream 259977 25101215 ~ 25115048 (+)
LOC103030657 LOC108436320,LOC108276397 coding downstream 280901 25122139 ~ 25132742 (+)
LOC103027821 NA coding downstream 294426 25135664 ~ 25174140 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding downstream 334780 25176018 ~ 25181374 (+)
G134476 NA non-coding upstream 595 24840129 ~ 24840348 (+)
G134475 NA non-coding upstream 1008 24839305 ~ 24839935 (+)
G134462 NA non-coding upstream 36147 24804059 ~ 24804796 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding upstream 84464 24751925 ~ 24756479 (+)
G134444 arfgef2,LOC108436330,LOC107737629,LOC107562465,LOC107671990 non-coding upstream 121555 24715513 ~ 24719388 (+)
G134615 NA non-coding downstream 351353 25192591 ~ 25192957 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding downstream 351972 25193210 ~ 25195840 (+)
G134617 NA non-coding downstream 354723 25195961 ~ 25197451 (+)
G134610 NA non-coding downstream 376919 25218157 ~ 25573608 (+)
G134630 haus7 non-coding downstream 470692 25311930 ~ 25317411 (+)
trnae-uuc_18 NA other upstream 29943 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 179409 24605649 ~ 24661534 (+)
G134426 NA other upstream 208813 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 337933 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 360571 24457876 ~ 24480372 (+)
smim4 smim4 other downstream 344578 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 396233 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 459543 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 478903 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 585496 25426734 ~ 25431174 (+)

Expression


Co-expression Network