G134610


Basic Information

Item Value
gene id G134610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25218157 ~ 25573608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU182075
CAGCATTTCCacttcaaaaacaaaacagaggctgtgatttttaatcaaaacacagtttgattttatTCACTTATGAAATGAGGCCTTTCCCCTCACACAACCAAGAACTGGTTAAGTGTGAAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGTTCAGTGGTCCATGGTTAGGCATGTACTTCACCCCACAGCCATCGGGCACCAGACGTTTCTCCGCCAGCAGGTCCTCAAAGTCCACTGCATTGAACTTGGTGAAGCCATACTTCTTGGAGATGTGGATCTAAGCagagaaaagaggaagaaaccaCAAAGTGAATGTGttcataaaacaaaacaaacaaacaaaaagtccACCATTAAAAGAATTCTATGCAGATTGTCTCAGCGGTCCCTTTAAGGACCCAGCCCTTCGCAGCTGGGCACATACACAAACCGAAGACTTGATGTCTGCAGCCTTTGCACACCAGAAAAGCACAGACAACCTGACTGGTCGGCTTAATAAACTGCAGAGACTCAGATTGAAGATCTCAGTCAGTCAATTATTTCTTATTACCCATGatgctttatttaatgttaatccACACTTTAACTGTGGCACACCTGTATATCAATTTACATCtaatatgatgtaaaaaaatgttttaaactgtttagCATTTAGTTTACCCAAGGCCTTctaggtctttttttttttacccagtgAAGCATGAACACAAAGTTGTTTACTTAGGCTTAACTTCTGTTCACTTgtcaatattatttaaattactcaAATTATTCAAAAACAGTCAAAATTCAATAACTGCTTTTTAACATACCTTCTGACGGCCAGGGAACTTGAACTTGGCTCTCCTCAGAGCCTCAATGACATGTTCCTTGTTCTGGGCTTTTGTGCGCACAGACATGATCACCTGTCCAATGTTCACACGAGCCACTGTGCCCTGGGGTTTTCCAAAAGCACCACGCATTCCAGTCTGGAGCCTGCAGACACAAAACATACAACCCAGGTTACACAGTGAGAGAACAGCCAATTTCCAATTGAACTGAATATTTCCATAAGATCTTTTGTCTCAATGGTCCCTTAAAGGACCCAGCACCTCACAGCTGGGCTCATACACAACCAAAGATTCACTGTCTGCAGCTTTTGCACACCAGAACAGTACAGACAACCAAGCTGGTCGGCTTAATAAACTGCAGATGAAGTGTTTAGACCTGGCACAAGCTCACCTATCAGCTCCGGCACAGGATAACATTTTGTTGATGCGGATGACGTGGAAAGGATGCAGGCGCACACGGATGTGGAAACCATCCTTACCGCAGGTCTTCACCATGTATTTGTTAGCACAGATACGGGCAGCCTCAAGAGCTGAAGGACAGCTGTTCATATTCATCAGACACCATGTGACCGCACAAGGGGAACTCATCCACCTTAGCCTTCTTTCGGCCCAAGTCGAAGATCCTGATCTTGGGATCGGCACACCCCGACAGAAGCGGGACTTGGGGTAAGGCTTGTTTTTGCAGTATCTGTAGctgtgaaagaaaagaaaaccacAGTCAGGGTTGCAGTTCTAGTACTTTAAGTGTGTAAAAGGATCTAAACTAGTCCTGTCACAGTAACATTTTGTCTGGACAATATATTGACtgagaaataa
>TU182080
CAGCATTTCCacttcaaaaacaaaacagaggctgtgatttttaatcaaaacacagtttgattttatTCACTTATGAAATGAGGCCTTTCCCCTCACACAACCAAGAACTGGTTAAGTGTGAAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGTTCAGTGGTCCATGGTTAGGCATGTACTTCACCCCACAGCCATCGGGCACCAGACGTTTCTCCGCCAGCAGGTCCTCAAAGTCCACTGCATTGAACTTGGTGAAGCCATACTTCTTGGAGATGTGGATCTGACGGCCAGGGAACTTGAACTTGGCTCTCCTCAGAGCCTCAATGACATGTTCCTTGTTCTGGGCTTTTGTGCGCACAGACATGATCACCTGTCCAATGTTCACACGAGCCACTGTGCCCTGGGGTTTTCCAAAAGCACCACGCATTCCAGTCTGGAGCATCAGCTCCGGCACAGGATAACATTTTGTTGATGCGGATGACGTGGAAAGGATGCAGGCGCACACGGATGTGGAAACCATCCTTACCGCAGGTCTTCACCATGTATTTGTTAGCACAGATACGGGCAGCCTCAAGAGCTCAGAGGACAGCTGTTCATATTCATCAGACACCATGTGACCGCACAAGGGGAACTCATCCACCTTAGCCTTCTTTCGGCCCAAGTCGAAGATCCTGATCTTGGGATCTGGCACCCCGACAGAAGCGGGACTTGGGGTAAGGCTTGTTTTTGCAGTATCTGTAGctgtgaaagaaaagaaaaccacAGTCAGGGTTGCAGTTCTAGTACTTTAAGTGTGTAAAAGGATCTAAACTAGTCCTGTCACAGTAACATTTTGTCTGGACAATATATTGACtgagaaataacaaataatgattataatttttaaaaccCTTTATGCAATGATAAGGTAAGAGCATAATGCAAATACACCCTTTACAAAAGtactaaaaattaaaatcaaacatCCTAAACATTTACCTTTACCATATTGtcctagcttttttttttatttattcatttacataaacaaacacGTTGTACACTAAGCTAATACAGGCTTACACCCAAcatgtgacaggcctacactaaactaaataagtatttaataatcaataattaatcAGATAGATAATTCCAACCTTGTTGCAAAAAAGTTTAAGGTAATATTAATTTACCAAGACGAAACCGTATAAATAAAAGTACTTAATTTAGTCAGGTGAACCTAGCCAGTCAACCTAGATAGTTAGCTAAACTAAAGCTATATAGTTATAACCTCTCATGAAACAAGACAAAATGTGCAAGCCAACAACCTTAAAAACCTCTAGATATATTGGCTAATTAACTAGTTAGTTTAAATAGGAACTGGTCTTTAAACGTCGTTAAAAAATAGTTTGCATGATAAATTAAGTCTTGAGTTCGGTAACGTATATCTAGCTTAACgtaagaaaaaacaaatatcgTTACAGGAAATTTGTTGATTAATCGTTAATTGTTCTCTAAATATCACAAAGCCAGTATTTTACATTTGCCACAATGACACTAACGTTACTGGATTAAATAGTTTGGTTTAATGAACTAAGCTTTACTGTCAagccttagcattagctactggtTAGCTACTGAGCTAACTAGCAACTAAAATAATGTGTTCATGTGTGGaacaacaaaacactgaattaaaccaCGGTAGCTAAGTTACAGTCACACAGTCGGATGGCGAGTCCCAGGTCTACAGTATAAAACGCCGCAGTGACTCCAGCCCGGCTCCGCGGCCCGCTCTCCTCCGCCACATGGTTTGTTAGCGGCCCTGCCATTTTCAGCCCCTCTACCCCACACACATCTAAAACTACAAAATCCTCCACTTACCAGCGGGCTGGACGGCGGCCCATGGTTGCGATCTgtaacaaacacagacacaatcACTTTAATAACAGAACCTGCGCTTTAAACCCCAGATATGAGCGATTTAATGTAAAATCAGTGAAGAGCGCGAGAACAGCCGCCCGCTCCACGCACTCACCTAATGGAGGAAAGGAAGTCCTCAGCGCTTCCGCCGCGTCATATACTCTCTAAACATGGAGGTCAGACCCATTTATCCCCCAGATCCGCGCAGTCACAATGACTTAACATTTATAATCA
>TU182081
CAGCATTTCCacttcaaaaacaaaacagaggctgtgatttttaatcaaaacacagtttgattttatTCACTTATGAAATGAGGCCTTTCCCCTCACACAACCAAGAACTGGTTAAGTGTGAAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGTTCAGTGGTCCATGGTTAGGCATGTACTTCACCCCACAGCCATCGGGCACCAGACGTTTCTCCGCCAGCAGGTCCTCAAAGTCCACTGCATTGAACTTGGTGAAGCCATACTTCTTGGAGATGTGGATCTAAGCagagaaaagaggaagaaaccaCAAAGTGAATGTGttcataaaacaaaacaaacaaacaaacaaacaaacaaacaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaaaacattacaatccAATGGACAAAGTCCAGGACAAAAATAGCTCAAGCTTTCATccttatattaattaaaaaaaacaacaactcgtATTCAACAATTATCGAATCCTACAACTGAACAGGCTACACTTTGGagagatacaaaaaaacaaaacaaaaaaaaaagcactcaaattAGCCAGTCCACCTTGTGTGTCAATAAGGGTGTGGATAATATTATTTGTCTGCGGGGTTAACCATTAATCAGTGAACAGCAAAAGTGGTAGCATGTCTACAATGTTTCCACGTCTTCTTTAAACAGCGTGCAGGTGTGTGACAAGCAGCTCAACACCCTGTAAATGGGGACAAACAAGGGTGCTTAAGCACCTCTTGGCAGTGCACCTTCTCATCTGTTGTGATGTGTATGTGATCAAACCTCTTCACCCTACTTGTGAAGGTCTCTGTGCACCATCTCCACGTTCAGAGATAACTATCTACATCCTGCGTGTGTTTGAGTGAAGAAACTGCCTTCCTTTGCGTGAATCTATACATAGTCTTAGTGTTGGGAGACAAGTGaatggcttttttttcttttttttcttccatcaGGTCTAATCTGAGATGCTGCATGAAACGCTGCAGCGATAAGCACCTTTGCTGTGCTTGATCAGCTGATAGTCtttttttgagagagagagagagagaggaaggaaaaGTGTCTCCCTGAGCGCCGCTGTTTCATCACCACAGCTTAGGTCAAGTTTAGTCCACCTCCTCCATGCTGGTATAGGATGGGCCGGAGCAATCTGCCGAGTGGGTAAATAGGTCTGAGGTCACCTCCGCGCCCAACTGAGGGGATCCTTCAGGGTCCAGGTCTGTCCCAAAGAGTGCCTGGCTAGAGGCCTGTAAAATAAACCATGGTTTTAATGTGCAATATTAGATGTCCGGTTCGGTCCAcatgaaaggaaagaaaaagaagacaagCTTTAACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182075 False 1654 lncRNA 0.43 3 25218157 25220135
TU182080 True 2141 lncRNA 0.42 5 25218157 25221411
TU182081 False 1363 lncRNA 0.42 2 25218157 25573608

Neighbor

gene id symbol gene type direction distance location
LOC103029812 LOC108436316 coding upstream 154 25205788 ~ 25218003 (+)
LOC103028649 kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715 coding upstream 33857 25182177 ~ 25184300 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding upstream 36783 25176018 ~ 25181374 (+)
LOC103027821 NA coding upstream 44017 25135664 ~ 25174140 (+)
LOC103030657 LOC108436320,LOC108276397 coding upstream 85415 25122139 ~ 25132742 (+)
LOC103044939 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874 coding downstream 213421 25787029 ~ 25797553 (+)
LOC103044421 LOC103044421,LOC108434847,LOC108276484,LOC103384678 coding downstream 225821 25799429 ~ 25802413 (+)
LOC103043212 slc35c2,col20a1,LOC108275935,LOC107712700,LOC107699598,LOC107737588,LOC107672031 coding downstream 234370 25807978 ~ 25862859 (+)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953 coding downstream 290972 25864580 ~ 25868951 (+)
adnp adnp coding downstream 295944 25869552 ~ 25879466 (+)
G134617 NA non-coding upstream 20706 25195961 ~ 25197451 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding upstream 22317 25193210 ~ 25195840 (+)
G134615 NA non-coding upstream 25200 25192591 ~ 25192957 (+)
G134477 NA non-coding upstream 376919 24840943 ~ 24841238 (+)
G134476 NA non-coding upstream 377809 24840129 ~ 24840348 (+)
G134838 NA non-coding downstream 161996 25735604 ~ 25736783 (+)
G134862 NA non-coding downstream 203092 25776700 ~ 25777158 (+)
G134896 NA non-coding downstream 346630 25920238 ~ 25927409 (+)
LOC111194125 NA non-coding downstream 485125 26058733 ~ 26061416 (+)
LOC103028539 NA non-coding downstream 679866 26253474 ~ 26259570 (+)
smim4 smim4 other upstream 27851 25185816 ~ 25190306 (+)
trnae-uuc_18 NA other upstream 407157 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 556623 24605649 ~ 24661534 (+)
G134426 NA other upstream 586027 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 715147 24489905 ~ 24503010 (+)
G135096 alg13,LOC107597764 other downstream 1055261 26628869 ~ 26638528 (+)
LOC103044303 LOC103044303 other downstream 1622697 27196305 ~ 27197918 (+)
LOC111194129 NA other downstream 2187539 27761147 ~ 27871003 (+)
LOC103041614 NA other downstream 2439301 28012909 ~ 28040566 (+)
LOC103039855 LOC108443465 other downstream 2609698 28183306 ~ 28204183 (+)

Expression


Co-expression Network