G134617


Basic Information

Item Value
gene id G134617
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 25195961 ~ 25197451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU182097
TTTGGTCATCATCAACAGGAGTTTCATAGTCTGGGACTTCAATAAcctttttTTAGGTTTTTTCACCTCCATGAAAGTATTATTAGCAGCAAATGTAAGGCGCAGTCCTCTTGCTTGAATTCTGTTTCGAGGCTCCACTTTCCTCTCATTTTGTGCTGCTGCACAGAACGTCCACAGCACAATCAGAACGAAGAAAATTAACATCCTCATATCCATCTTCTCCAGCCGAGCAGCAGGGCTCGCccttctcagtgtgtgtgtgtgtgtgtgtgtgctgcactgAGAGGgccagtgcagtgcagtgtgtgtcgtgtgtgtgtctggaagaaaGGAGAGACCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182097 True 343 lncRNA 0.46 2 25195961 25197451

Neighbor

gene id symbol gene type direction distance location
LOC103028649 kctd6b,kctd6,LOC103028649,LOC108436290,LOC107671957,LOC107570288,LOC107737715 coding upstream 11661 25182177 ~ 25184300 (+)
LOC103028342 abhd6b,LOC108436291,LOC107712730,LOC108275644,LOC107699577,LOC107737716 coding upstream 14587 25176018 ~ 25181374 (+)
LOC103027821 NA coding upstream 21821 25135664 ~ 25174140 (+)
LOC103030657 LOC108436320,LOC108276397 coding upstream 63219 25122139 ~ 25132742 (+)
LOC103031199 atp6ap1lb,LOC103031199,LOC108436292,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC105890636,LOC108275547 coding upstream 80913 25101215 ~ 25115048 (+)
LOC103029812 LOC108436316 coding downstream 8337 25205788 ~ 25218003 (+)
LOC103021519 tnnc1b,LOC108276054,LOC107671989,LOC107568847,LOC107593406,LOC105890642,LOC103374679 coding downstream 343310 25540761 ~ 25544523 (+)
LOC103044939 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108434838,LOC107737591,LOC107568845,LOC101472191,LOC102782874 coding downstream 589578 25787029 ~ 25797553 (+)
LOC103044421 LOC103044421,LOC108434847,LOC108276484,LOC103384678 coding downstream 601978 25799429 ~ 25802413 (+)
LOC103043212 slc35c2,col20a1,LOC108275935,LOC107712700,LOC107699598,LOC107737588,LOC107672031 coding downstream 610527 25807978 ~ 25862859 (+)
G134616 LOC107737613,LOC107671963,LOC107560871,LOC108436318,LOC107570281 non-coding upstream 121 25193210 ~ 25195840 (+)
G134615 NA non-coding upstream 3004 25192591 ~ 25192957 (+)
G134477 NA non-coding upstream 354723 24840943 ~ 24841238 (+)
G134476 NA non-coding upstream 355613 24840129 ~ 24840348 (+)
G134475 NA non-coding upstream 356026 24839305 ~ 24839935 (+)
G134610 NA non-coding downstream 20706 25218157 ~ 25573608 (+)
G134630 haus7 non-coding downstream 114479 25311930 ~ 25317411 (+)
LOC103024233 NA non-coding downstream 127935 25325386 ~ 25328240 (+)
LOC103022152 NA non-coding downstream 280013 25477464 ~ 25527291 (+)
G134669 NA non-coding downstream 292129 25489580 ~ 25494180 (+)
smim4 smim4 other upstream 5655 25185816 ~ 25190306 (+)
trnae-uuc_18 NA other upstream 384961 24810929 ~ 24811000 (+)
LOC103036968 LOC108436332 other upstream 534427 24605649 ~ 24661534 (+)
G134426 NA other upstream 563831 24621908 ~ 24632130 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 692951 24489905 ~ 24503010 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 40020 25237471 ~ 25296336 (+)
emd LOC108436312 other downstream 103330 25300781 ~ 25306348 (+)
G134632 atp2b3 other downstream 122690 25320141 ~ 25324699 (+)
cfap126 cfap126 other downstream 229283 25426734 ~ 25431174 (+)
G134662 NA other downstream 263016 25460467 ~ 25461402 (+)

Expression


Co-expression Network