CI01000012_01677949_01691893 (POLR1B)


Basic Information

Item Value
gene id CI01000012_01677949_01691893
gene name POLR1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 1677904 ~ 1692036 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_01677949_01691893.mRNA
ATTCTCTTCACACTCCATCATAGTAGGCTTGGAGGTGTGCAACAATGAAGTAGAAAACTTTTATTTTGAAGTTTGGCAACAGGAAGTTATGCGCTCTGTTGCCGAAATCACGTTGACAAGCACGCACGTGTGTGCACAGCAGCATGGATCTCTCCAAGTGGTGTAATCTAAAGTCCGAACCGAGTTTAAAGCATTTGACAGAGGCAGGGTTCGGTGTCCCGAAAAACAAACAGCACGTGCCCGTACAGGAGCTGGTGAAGGCGCACATTGATTCGTTTGATCAGGCAGTTACTGATGGATTATGTCGGGTTGTGGAGGGCATTCCTCCGTTGGAGTTCATGTACAAGGGAGACAGAGTCAGTCTGTCTTTTGTAGAGGCCATCATTCAACCGCCAGCGATTGCTAAAGGAGGAATCAGCAGAGATGTGCGGGTGTTCCCTGCCGAGTGCAGAGGCAGGCGCTGCACATACAAGGGGAAGCTAGTGGCGGATGTGAGCTGGTCTATTAATGGCATTCCCAAAGGAATCATCAGACAGGCTCTGGGACAGCTGCCAATCATGGTCAAATCGAAACTATGCAACCTTCATGGTCTCTCACCCAAAGAACTCATCGAACATCACGAAGAAGCTGAGGAAATGGGCGGTTATTTTCTGGTGAATGGCATAGAGAAGGTGATTCGTCTTCTGATCATGCCAAGGAGGAACTATCCCATCACCATATCAAGACCAAAGTTTAAGACCAGAGGACCAGGCTACACTCAATACGGTGTTACAATGCATTCTGTAAGGGATGAACACACAGCCGTTAATATGAATCTTCACTACCTGGAAAATGGAACAGTGATGGTGAATTTTATATACCAGAAAGAGCTGTTCTTTCTTCCCTTGGGCTTTGCACTGAAGGCTCTAGTGGATTACTCGGACTACCAGATCTTCCAGGAGCTGATTAAAGGTCGAGAGGAGAACTCTTTCTTTAAGAGCTGTGTCTCAGAAATTCTGCGTGTTGTCATGGACCAGGGCTGCACCACTAAAGCCAAGGTGCTCCGTTACCTGGGCGAGCGTTTCCGGGTCAAACTCAACCTCCCAGAGTGGTACACTCACGAGCAGTGCGCTCACTTCCTGTTAGATGAATGTCTGTGTATTCACCTGAAGTCAGATGTGGAGAAGTTCTACATGTTGTGTATGATGACACGGAAACTCTTCAGCTTTGCCAAGCAGGAGTGTATGGAGGAGAACCCTGACAGTCTGATGTTCCATGAAGTTCTCACACCAGGCCAGATCTACCTCATGTTCCTGAAAGAGAGAATGGCAGGCTGGCTAGTGTCGGTGAAATATGCCTTGGAAAAGAGAAGTGAAAAACTGGGAGTGCTGACTGCAGATACTTTGACCAAAGGCTTCAACATGGCTACAGATCTCACTAAAGCCTTCGAGTATATGTTAGCCACAGGAAACCTCCAGTCCAAGACAGGTCTGGGCTTGCTGCAGAACTCCGGACTGTGTGTCGTAGCAGATAAGTTGAACTTCATCCGTTACCTGTCTCATTTCCGGTGCGTGCACAGAGGAGCCAGCTTCGCTAAGATGAGGACCACATCTGTGCGGAAGCTGCTGCCAGAGTCTTGGGGTTTCCTGTGTCCGGTACACACTCCTGACGGAGAACCATGCGGCCTTATGAACCACATGACAGCCCATAGTGAGATTGTGACACAGGTGCATCCCACAACCACCCTGCCTGCCCTGCTGTGCTCTCTAGGAGTGACTGCTGTAGACGGTACCCCCAGTCAGCCGTATTCAGACTGTTATCCCGTCATACTGGACGGGGCCATGGTTGGCTGGGTGGAAAAAGAAGTGGCGCCCTCAGTCATCGAATCTCTTCGCAGATTTAAGGTGCTGGGAGAGAAAAAAGTGCCGCCCTGGACTGAGATTGTTCTGGTTCCTCAGACGGGTAAAGCCAGCTTGTACCCAGGCCTTTATCTGTTCACCACACCCTGTCGCATGGTGCGGCCCGTCCGGAACCTTGGCCTGGGCAAACAGGAGCTTATTGGCACCTTTGAACAGGTGTTCCTGAATGTGGGCATCTTCGAGGAAGAGTTAGAGGAGGGAGTGACCACACATCAAGAGCTGTTTCCTCACAGCATGTTGAGCGTGGTGGCAGAATTCATCCCTTTCTCTGATCACAACCAGAGCCCCAGAAACATGTACCAGTGCCAGATGAGTAAACAGACCATGGGCTTCCCGCTGCATTCATACCAAGACCGATCCGACAATAAACTTTACCGTCTGCAGACCCCCCAGAGTCCTCTGGTCAGACCCTCGATGTACGACCACTACAACATAGACAATTACCCTATTGGCACCAACGCAATAGTTGCTGTCATTTCTTACACTGGCTACGATATGGAAGATGCTATGATCGTCAATAAGTCCTCATGGGAGCGTGGCTTTGCTCATGGTTCTGTTTATAAGACCGACATCATAGATCTGGCTGAAAAGTTCAAAGGTGAAATCGACATTGTGTTTGGGGTGAAGCCAGGTGACCCCAAAGTAATGGACAAACTGGATGCAGATGGATTGCCATTTATCGGCTCCATGCTGAAGTATGGAGAACCTTACTACAGCTACATCAATCTCATTACCGGCCAGAGTCATGTGGTCTTTTTCAAGTACCAGGAGAGCTCCATTGTGGACAATATCAAGGTGTGCAGCAATGACGCCGGCACTGGCCTTTTCAAGCGCGTTTGCATCACAACCCGCATTCCCAGGAACCCCACCATCGGAGACAAGTTTGCCAGTAGACACGGTCAGAAAGGAATCCTGAGCCGTCTGTGGCCCGCGGAGGACATGCCCTTCACCGAGAGTGGTATGAGCCCGGACATCCTGTTCAACCCTCATGGCTTCCCCTCTAGAATGACCATCGGAATGCTTATCGAGAGCATGGCTGGAAAATCTGCGTCCCTCCATGGCCTGTCTCACGACGCCACACCCTTCAGGTTCTCTGAGAAAAACTCTGCATTGGAGCACTTTGGCAAGATGCTGAAAGCAGCAGGATACAACTTCTACGGAACGGAGAGGCTCTACTCCGGCATCAGTGGCTTGGAGCTCGAGGCAGACATCTTTATCGGGGTGGTTTACTACCAGCGCTTGCGTCACATGGTCTCCGACAAGTTCCAGGTGAGAACTACAGGAGCAAGAGATAGAGTGACCAATCAGCCAGTGGGAGGGAGGAACATCCAGGGAGGAATCCGGTTTGGAGAGATGGAACGGGATGCTTTGCTGGCTCACGGGTCGTCGTTTCTACTTCACGACCGGCTGTTTAACTGCTCTGACCGCTCCGTGGCACAAGTTTGCATAGACTGCGGCAGCCTGCTGTCGCCGCTTCTGGAAAAGCCGCCGCCTAATTGGTCATCTATACGCCATCGGAAAACCATCTGCTTGTTGTGCAATAAGAGCGACTCAATTGAGACTGTATCCGTTCCTTATGTGTTCAAATACTTCGTAGCAGAGCTTGCAGCAATGAACATTAAAATCAAATTAGACGTCAAGTAAAATTGTTGGACTGTATTCAGTTTCTTTGCTTACGTGGAAAATAAA

Function

symbol description
polr1b Enables RNA polymerase I activity. Involved in neural crest cell migration. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including alar plate midbrain region; eye; liver; musculature system; and optic tectum. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 4. Orthologous to human POLR1B (RNA polymerase I subunit B).

GO:

id name namespace
GO:0005736 RNA polymerase I complex cellular_component

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_01677949_01691893.mRNA True 3587 mRNA 0.50 15 1677904 1692036

Neighbor

gene id symbol gene type direction distance location
CI01000012_01601665_01604244 CYP1B1 coding downstream 73551 1601654 ~ 1604353 (-)
CI01000012_01489297_01490202 CDC42EP3 coding downstream 187591 1488830 ~ 1490313 (-)
CI01000012_01256938_01257273 PRKCE coding downstream 420631 1255717 ~ 1257273 (-)
CI01000012_01240945_01242653 SOCS5, SOCS5B coding downstream 435251 1240517 ~ 1242653 (-)
CI01000012_01203854_01208893 NA coding downstream 469011 1203452 ~ 1208893 (-)
CI01000012_02239088_02240850 NA coding upstream 546364 2238400 ~ 2240862 (-)
CI01000012_02251322_02337964 PRKG1A, PRKG1, PRKG1B coding upstream 559101 2251137 ~ 2339368 (-)
CI01000012_02357517_02361973 NKX1-2, NKX1.2LA coding upstream 665088 2357124 ~ 2361973 (-)
CI01000012_02381631_02386668 NA coding upstream 689312 2381348 ~ 2386668 (-)
CI01000012_02395816_02404347 HPS1 coding upstream 703521 2395557 ~ 2404347 (-)
G69722 NA non-coding downstream 20277 1657399 ~ 1657627 (-)
G69720 NA non-coding downstream 22125 1655480 ~ 1655779 (-)
G69700 NA non-coding downstream 79747 1597928 ~ 1598157 (-)
G69696 NA non-coding downstream 82610 1594853 ~ 1595294 (-)
G69647 NA non-coding downstream 157516 1520093 ~ 1520388 (-)
G69726 NA non-coding upstream 27969 1720005 ~ 1720265 (-)
G69752 NA non-coding upstream 78224 1770260 ~ 1786010 (-)
G69759 NA non-coding upstream 101995 1794031 ~ 1794263 (-)
G69777 NA non-coding upstream 117888 1809924 ~ 1810129 (-)
G69778 NA non-coding upstream 124986 1817022 ~ 1817306 (-)
G69562 NA other downstream 301606 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 526706 1135676 ~ 1192154 (-)
G69332 NA other downstream 902025 775364 ~ 775879 (-)
G69277 NA other downstream 947439 729920 ~ 730465 (-)
G69161 NA other downstream 1089889 587604 ~ 588015 (-)
G70774 NA other upstream 1174472 2866508 ~ 2866892 (-)
G71898 NA other upstream 2841494 4533530 ~ 4534672 (-)
G72068 NA other upstream 3084184 4776220 ~ 4780132 (-)
G72204 NA other upstream 3601737 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 3671606 5413369 ~ 5416780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006195 polr1b coding NC_007124.7 CM002897.2 41917606 ~ 41940467 (+)