LOC111194129


Basic Information

Item Value
gene id LOC111194129
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 27761147 ~ 27871003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU183260
tgtgtgtgtgagagagagaaagagacagggagAAAAGGAGGAATAGTGTGTTTGTcttagtgagagacagacagagtgtgtgagagaaagatacACACGAAGGActagtgtgtgtttctgagagacagagagaaggaatAGTGTGTGTcttagagagaaagacagactgtgtgtgtgtgtgagagagagagagacatgaaggaatagtgtgtgtgagcgagagagagacaaggaGGAATtttatgtgagagagagagagagacatagggagggtgtgtgagtgtgtgtgtgagagagagacacagggagggatagtaagagagagtgagagagcgcgTGGTGTGCTTGCATGCATATAAAAGAGAGGGagcgagcgagtgtgtgtgtgagaaaaaggAAGCTGTGAGTGTCTGTGTTTAAACGGCGAACTCCACtcattttctctccctctcttttttggagtgtttttttttttttttgtccctccctccctccctccctcgaAGTAGCTAGCCAATTAGCTTTCTAGCAAGCTAGTGCACACACAGCAGGCACATTCACTTCTTCTTATTCTATCCTTCTCTTCGCCCTCAAGCGGTTTGTTTTTGTTGGTTTTAGTGCCCGGTCTttagctaaccgctagctaactagttagctatgtGACACGCTAGCTTTataggttagctaagctagctaccAACCACACGGCGAGCAGGAGGACTTGAGTGAGCCGTTTGTttccacactcactcactctccctcacacacgcacacacagaggGAAAGAGGCGAGAGAAGCAGAGAAGCCCCCCTTctcccctcctcttcctcctctcttcttcttcctcctcctcttcctcctcttttccCCTCCTCTTCTCTGGCGAGTTGAACGTGAATACATTAGCAGAGCGAGGGCGCCTTTTGTTGAGGCAAGTGCCCGTTTCCATCCGTGTGGACGgcggagtgatttttttttttttgctggaccGGATGAAGTGATACCGTTTACCCTGCGGGCTCGTGCCTCTCGCTGTTTTTTCTAGAGGGggtgttttttattgtgtgttttctggCTCAGGCCGGCAAGTTCGCCCCGCAGATACGGATTATACCTCTTTCGTTCGCGGCGCTGGAGTGGAAGTTAGCCGGGCAGACTGGAGACTATAGCGGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAG
>TU183261
GCTTTTTTCTCTCTGACTGAAGGGAAAGGCGAGCAGCGCTGTGCGCGACTCCACACCACCCACAGCTCATAACGCTCACTCCTCTGACCGACCCGTCCACCCACCCACCCGGTCACTAGCGCTGCTGAAGCCCCCAGTGCTCCCTCCTGTCCTCCACTCGCTCcctggcagcagcagtggcagcagcggCAGCGGCGGCAGTGGCAGTTGGCCGGTGtccgctagctagctaacattaacctGCCGCTTTGTGTTTTGCTTGCTTGCTGCCCCATCTCAAACAAATCTCTGATGTTGTAGAGCAGGAGATAAGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAG
>TU183262
TGCCCGGTCTttagctaaccgctagctaactagttagctatgtGACACGCTAGCTTTataggttagctaagctagctaccAACCACACGGCGAGCAGGAGGACTTGAGTGAGCCGTTTGTttccacactcactcactctccctcacacacgcacacacagaggGAAAGAGGCGAGAGAAGCAGAGAAGCCCCCCTTctcccctcctcttcctcctctcttcttcttcctcctcctcttcctcctcttttccCCTCCTCTTCTCTGGCGAGTTGAACGTGAATACATTAGCAGAGCGAGGGCGCCTTTTGTTGAGGCAAGTGCCCGTTTCCATCCGTGTGGACGgcggagtgatttttttttttttgctggaccGGATGAAGTGATACCGTTTACCCTGCGGGCTCGTGCCTCTCGCTGTTTTTTCTAGAGGGggtgttttttattgtgtgttttctggCTCAGGCCGGCAAGTTCGCCCCGCAGATACGGATTATACCTCTTTCGTTCGCGGCGCTGGAGTGGAAGTTAGCCGGGCAGACTGGAGACTATAGCGGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAG
>TU183263
CCTTctcccctcctcttcctcctctcttcttcttcctcctcctcttcctcctcttttccCCTCCTCTTCTCTGGCGAGTTGAACGTGAATACATTAGCAGAGCGAGGGCGCCTTTTGTTGAGGCAAGTGCCCGTTTCCATCCGTGTGGACGgcggagtgatttttttttttttgctggaccGGATGAAGTGATACCGTTTACCCTGCGGGCTCGTGCCTCTCGCTGTTTTTTCTAGAGGGggtgttttttattgtgtgttttctggCTCAGGCCGGCAAGTTCGCCCCGCAGATACGGATTATACCTCTTTCGTTCGCGGCGCTGGAGTGGAAGTTAGCCGGGCAGACTGGAGACTATAGCGGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAG
>TU183266
CCCCAGCCCAACAGTCCCTCAGAAAGGCTGAGCAGTGAAGGAGTTCTCTCAGTCCTGTGAGGCCTAACCTGAAGGCTGAATGCGTGTGTGAGGAGGCATGTGTGAGGAGCACTTCGCACTTCACACCAAGGAAAAAGGTTTTGAGAGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAG
>XM_022677469.1
ctcgaAGTAGCTAGCCAATTAGCTTTCTAGCAAGCTAGTGCACACACAGCAGGCACATTCACTTCTTCTTATTCTATCCTTCTCTTCGCCCTCAAGCGGTTTGTTTTTGTTGGTTTTAGTGCCCGGTCTttagctaaccgctagctaactagttagctatgtGACACGCTAGCTTTataggttagctaagctagctaccAACCACACGGCGAGCAGGAGGACTTGAGTGAGCCGTTTGTttccacactcactcactctccctcacacacgcacacacagaggGAAAGAGGCGAGAGAAGCAGAGAAGCCCCCCTTctcccctcctcttcctcctctcttcttcttcctcctcctcttcctcctcttttccCCTCCTCTTCTCTGGCGAGTTGAACGTGAATACATTAGCAGAGCGAGGGCGCCTTTTGTTGAGGCAAGTGCCCGTTTCCATCCGTGTGGACGgcggagtgatttttttttttttgctggaccGGATGAAGTGATACCGTTTACCCTGCGGGCTCGTGCCTCTCGCTGTTTTTTCTAGAGGGggtgttttttattgtgtgttttctggCTCAGGCCGGCAAGTTCGCCCCGCAGATACGGATTATACCTCTTTCGTTCGCGGCGCTGGAGTGGAAGTTAGCCGGGCAGACTGGAGACTATAGCGGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAGGTAAGCACCTTTTCCAAATACGATTTAAAGTAGTGAACTGGTGAACTGTTGAACTTCCCTGAGCACCTCATATGCTTCTGTCCGTTTGCCGGCTCGAGTCTGACATTTAGCTCTGAGGAACTTTTGATCCGGCTGAGAATTCGACAGTAACATTTACGGACTGCTCTCAACTTCATTAGGAATTTTCACACTTCATGCTAGACGGCACATTTCCGGGCTAATTACATGCCAGTCTGTTGTCAAGGTAACTTGTTGGCCTGGTAAATGCGTTCCTGTTTTGATCTGAAGTAAGCAGAGTGAGGGTCTTTGACATGCCGCAGTGTAGGACGGGAATGTGTTCAATAATATTATGCTAACGTAGTGAATATCTCTGCATTAGCATACCACTAGCGGATCGCACTTGCGTAAGAGAAGATCGGTCTTATAACTATCGTTTAGATGAAAAGGAATGCATTGGTATTGGCTACCAGGACTGACTGTGAAATTATTGTAATCGTTTTTCATGAAAGCATTAAAGAATTTGCC
>XM_022677470.1
TTTCATGCGGGGCTTTTTTCTCTCTGACTGAAGGGAAAGGCGAGCAGCGCTGTGCGCGACTCCACACCACCCACAGCTCATAACGCTCACTCCTCTGACCGACCCGTCCACCCACCCACCCGGTCACTAGCGCTGCTGAAGCCCCCAGTGCTCCCTCCTGTCCTCCACTCGCTCcctggcagcagcagtggcagcagcggCAGCGGCGGCAGTGGCAGTTGGCCGGTGtccgctagctagctaacattaacctGCCGCTTTGTGTTTTGCTTGCTTGCTGCCCCATCTCAAACAAATCTCTGATGTTGTAGAGCAGGAGATAAGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAGGTAAGCACCTTTTCCAAATACGATTTAAAGTAGTGAACTGGTGAACTGTTGAACTTCCCTGAGCACCTCATATGCTTCTGTCCGTTTGCCGGCTCGAGTCTGACATTTAGCTCTGAGGAACTTTTGATCCGGCTGAGAATTCGACAGTAACATTTACGGACTGCTCTCAACTTCATTAGGAATTTTCACACTTCATGCTAGACGGCACATTTCCGGGCTAATTACATGCCAGTCTGTTGTCAAGGTAACTTGTTGGCCTGGTAAATGCGTTCCTGTTTTGATCTGAAGTAAGCAGAGTGAGGGTCTTTGACATGCCGCAGTGTAGGACGGGAATGTGTTCAATAATATTATGCTAACGTAGTGAATATCTCTGCATTAGCATACCACTAGCGGATCGCACTTGCGTAAGAGAAGATCGGTCTTATAACTATCGTTTAGATGAAAAGGAATGCATTGGTATTGGCTACCAGGACTGACTGTGAAATTATTGTAATCGTTTTTCATGAAAGCATTAAAGAATTTGCC
>XM_022677471.1
CCTCAGAAAGGCTGAGCAGTGAAGGAGTTCTCTCAGTCCTGTGAGGCCTAACCTGAAGGCTGAATGCGTGTGTGAGGAGGCATGTGTGAGGAGCACTTCGCACTTCACACCAAGGAAAAAGGTTTTGAGAGCTCTTCTGAAACACTGGGGTTGTTGGTGTGGCCAAATTTTCCCTGGGTTTGCTTGGTAAATTCAGAAGACTGAAGCCCAGGCTCACAGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAGGAAGGCACGTGGCGAATCATGACTGCcgacaaagagaaagacaaggagagggagagggatcGCGACCGAGACAGAGAGCGGGACAAGCGCGATAAGGCACGCGAAAGCGAAAGCTCGCGGCCCCGGCGCAGCTGCACGCTGGAGGGCGGAGCCAAGAACTACGCGGAAAGCGAGCACAGCGAGGACGATGATAATGAGGCGGCCGGCGGAGCCACGGCTGAGGAGGCCACCAAAAAGAGCAAGAAGAAGCTGCCCAAGAAGAAGTCGCGCTACGAGCGCACGGAGACGGGCGAGATCACCTCCTTCGTCACAGAAGATGACGTCGTTTACAGACCTGGAGGTAAGCACCTTTTCCAAATACGATTTAAAGTAGTGAACTGGTGAACTGTTGAACTTCCCTGAGCACCTCATATGCTTCTGTCCGTTTGCCGGCTCGAGTCTGACATTTAGCTCTGAGGAACTTTTGATCCGGCTGAGAATTCGACAGTAACATTTACGGACTGCTCTCAACTTCATTAGGAATTTTCACACTTCATGCTAGACGGCACATTTCCGGGCTAATTACATGCCAGTCTGTTGTCAAGGTAACTTGTTGGCCTGGTAAATGCGTTCCTGTTTTGATCTGAAGTAAGCAGAGTGAGGGTCTTTGACATGCCGCAGTGTAGGACGGGAATGTGTTCAATAATATTATGCTAACGTAGTGAATATCTCTGCATTAGCATACCACTAGCGGATCGCACTTGCGTAAGAGAAGATCGGTCTTATAACTATCGTTTAGATGAAAAGGAATGCATTGGTATTGGCTACCAGGACTGACTGTGAAATTATTGTAATCGTTTTTCATGAAAGCATTAAAGAATTTGCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0048839 inner ear development biological_process
GO:0031063 regulation of histone deacetylation biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060037 pharyngeal system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183260 False 1639 TUCP 0.52 2 27836835 27870478
TU183261 False 779 TUCP 0.59 2 27761158 27870478
TU183262 False 1021 TUCP 0.56 2 27837453 27870478
TU183263 False 829 TUCP 0.56 2 27837645 27870478
TU183266 False 613 TUCP 0.57 2 27863211 27870478
XM_022677469.1 True 1665 mRNA 0.51 2 27837334 27871003
XM_022677470.1 False 1315 mRNA 0.52 2 27761147 27871003
XM_022677471.1 False 1122 mRNA 0.50 2 27863227 27871003

Neighbor

gene id symbol gene type direction distance location
LOC103038459 eno1,eno1a,LOC103038459,LOC108434336,LOC107703060,LOC107591100,LOC107716106,LOC107593367 coding upstream 10438 27736727 ~ 27750709 (+)
LOC103039283 LOC108432612,LOC108276125 coding upstream 66253 27681105 ~ 27694894 (+)
gpr157 LOC108434350 coding upstream 94450 27657849 ~ 27666697 (+)
LOC103040114 LOC108434374 coding upstream 242548 27383919 ~ 27518599 (+)
LOC103042991 LOC108434426,LOC108276488,LOC107703064,LOC107591105,LOC107729743 coding upstream 392479 27352740 ~ 27368668 (+)
LOC111194026 NA coding downstream 185156 28056159 ~ 28059662 (+)
nfxl1 nfxl1,LOC107575600 coding downstream 538145 28409148 ~ 28447492 (+)
corin corin,LOC107731243,LOC107748931 coding downstream 579342 28450345 ~ 28491249 (+)
LOC103040187 LOC108414783 coding downstream 630621 28501624 ~ 28523052 (+)
LOC103038743 LOC103038743,LOC108414782 coding downstream 671087 28542090 ~ 28556031 (+)
LOC103039899 NA non-coding upstream 111458 27627415 ~ 27649689 (+)
G135411 spsb1,LOC103042472,LOC107591103,LOC107716103,LOC107703063,LOC107687410,LOC107593433 non-coding upstream 162288 27582331 ~ 27598859 (+)
G135371 NA non-coding upstream 384615 27375703 ~ 27376532 (+)
G135315 NA non-coding upstream 436632 27275127 ~ 27324515 (+)
G135309 NA non-coding upstream 525033 27234680 ~ 27236114 (+)
G135493 NA non-coding downstream 30681 27901684 ~ 27917054 (+)
G135494 NA non-coding downstream 34843 27905846 ~ 27908787 (+)
LOC111194025 NA non-coding downstream 68131 27939134 ~ 27940077 (+)
G135594 NA non-coding downstream 388605 28259608 ~ 28259910 (+)
G135608 NA non-coding downstream 445586 28316589 ~ 28325096 (+)
LOC103044303 LOC103044303 other upstream 563229 27196305 ~ 27197918 (+)
G135096 alg13,LOC107597764 other upstream 1122619 26628869 ~ 26638528 (+)
G134662 NA other upstream 2299745 25460467 ~ 25461402 (+)
cfap126 cfap126 other upstream 2329973 25426734 ~ 25431174 (+)
G134632 atp2b3 other upstream 2436448 25320141 ~ 25324699 (+)
LOC103041614 NA other downstream 141906 28012909 ~ 28040566 (+)
LOC103039855 LOC108443465 other downstream 312303 28183306 ~ 28204183 (+)
G135579 NA other downstream 355435 28226438 ~ 28242041 (+)
LOC103033230 NA other downstream 875768 28746771 ~ 28834600 (+)
G135728 ephb4,ephb4b,LOC107677667,LOC107679372,LOC107573942,LOC105009281,LOC107573199 other downstream 1062646 28933649 ~ 28954164 (+)

Expression


Co-expression Network